RNA id: XM_043235939.1


Basic Information

Item Value
RNA id XM_043235939.1
length 1399
RNA type mRNA
GC content 0.42
exon number 8
gene id c3h16orf89
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10385450 ~ 10389073 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGCGGCGGACCTGAGCCACGTGATGGGTTTGCTATGACAAACAGCTTCGCcttcaaaataagaaaaaaaagctactgGACAGACCACTCGCCCATTAACTATTTTCcgtttatttagtattttcaaAGTTCTTAAAATGTGGCATCTTTTCCTTGTGATTCTTATTCTCTCGTCTACAACTGATTTATCAAATCAGGACGTGATTGATAACATACTTCTGAGTTTATCCAAGGGAATTACATACTTTGACATGCAAGGAAGAAACATCAACCTGGACGGTGTCGTTGGATACCTAATACTTCAAGCGCAGCTGCAGGAGGCAACTCGAACTTGGCCGCATTCAGATTTTCTGAGTCTCTCTCAGCGAGCGGCTGCTGTTTCTATGTTGAAGAGACTGAACAAGAGCCTTTCTACTGCCGTCAGCGCTCTTCAGGAGACAGATCCCAAATACTACAAAGAGTTTGAGCCCATTTTGGACGGCTCCTTCTGGTCCCTGCCTGCAGAATGGAGCTCCACGGATCCCTCTCTCGTTTATACCTCAGTGAGGTCTATGGAGTGCTATGATGAGCAGTTGAGTGACAAGTGCATGACTCTCCTTCTAGGCACATGGAAAGACAACGGAACCCCATGCATTGTGACCAAGTCTTGCAGAGACACAATGACGCAATTCGGATGTCCGCACTATTCCCTGTCCCACCAGCTACTGTACTTCATGATAGGAATGATGAAAGGGTGCTCCAGAATGCTGAAGGGGGACCTGAGACTGTCTCGTGTCAACATTACTGTGGACCATTATAAGAGAATCTTCTGCTCCAACATGATGAAAAGCAACCAGGACATTTTCAAGAATGCTATTACTGCTCAAATGCAGgacatttttatagaaaacattcTTTTATGTGGTTTAGTGGGATTCTCGGACTTCTATAAACTGGACTGGTTGCAGTCTATTCTAACATGGCAAGATCAAGAAGCAGGCTGTTTTGGCAAAGAGGAGGACATCTCCCAGATCTTCGAGGAATTCTTGGATGCACCCCACAAACGggtgaaaagaagagaaaaaacactgaCAGATGGCTGCTCAAGTCATATGACAGGAGTTGCAGTGAGTACATTAGGAGGATTTCTCAACTATTACCTTTCAGAGCAGGACATAACGAAGAGACCCTTAATTTAAGGCCGTGCTTCATGAGATAAATCATTACAGAACTCAGTTTCCTTCTTTATCATGCTTTACAGATATTTATTCTTTCctctttgatcattttaatgaaagtgcTGTAGATTTAATGATATGTACACGATTCCAAGACAATGAATAGAAAGGCAAATGTTTTATGGTAAAAccaagaaaatgtatattttatatcaaataaataaaaaaaaccatacaGTA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27859 lncRNA downstream 345511 9993833 ~ 10039939 (-) False rbfox1
TU27812 lncRNA downstream 476833 9901531 ~ 9908617 (-) True G18638
TU27806 lncRNA downstream 592265 9789616 ~ 9793185 (-) True G18634
TU27799 lncRNA downstream 599326 9785249 ~ 9786124 (-) False G18628
TU27935 lncRNA upstream 12760 10401833 ~ 10402211 (-) True G18717
TU27965 lncRNA upstream 185094 10574167 ~ 10579140 (-) True G18745
TU27991 lncRNA upstream 288384 10677457 ~ 10678580 (-) True G18771
TU28025 lncRNA upstream 300091 10689164 ~ 10697539 (-) True G18795
XR_006248708.1 lncRNA upstream 300346 10689419 ~ 10695504 (-) True LOC122334019
XM_043229154.1 mRNA downstream 13247 10370056 ~ 10372203 (-) True si:ch211-76l23.4
XM_043229496.1 mRNA downstream 39143 10332223 ~ 10346307 (-) True gsg1l
XM_043233714.1 mRNA downstream 69724 10297430 ~ 10315726 (-) False fbxl16
XM_043233713.1 mRNA downstream 76832 10297430 ~ 10308618 (-) True fbxl16
XM_043235258.1 mRNA downstream 279024 9995745 ~ 10106426 (-) False rbfox1
XM_043235303.1 mRNA upstream 5241 10394314 ~ 10396339 (-) False eef2kmt
XM_043234872.1 mRNA upstream 229358 10618431 ~ 10625491 (-) True cyth4a
XM_043231876.1 mRNA upstream 289941 10679014 ~ 10687531 (-) True LOC122334005
XM_043231884.1 mRNA upstream 300346 10689419 ~ 10693664 (-) True LOC122334013
XM_043231907.1 mRNA upstream 309920 10698993 ~ 10702733 (-) True apol
TU27537 other downstream 922545 9426572 ~ 9462905 (-) True G18433
TU27085 other downstream 1986622 8309552 ~ 8398828 (-) True fmc1
TU27088 other downstream 2074101 8309552 ~ 8311349 (-) False fmc1
XR_006250544.1 other downstream 2166395 8218902 ~ 8219055 (-) True LOC122342198
TU27061 other downstream 2176357 8207764 ~ 8209093 (-) False LOC122339740
XR_006250486.1 other upstream 5241 10394314 ~ 10396341 (-) True eef2kmt
XR_006250541.1 other upstream 390028 10779101 ~ 10779235 (-) True LOC122342195
XR_006250542.1 other upstream 391029 10780102 ~ 10780196 (-) True LOC122342196
XR_006248663.1 other upstream 622863 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250462.1 other upstream 1305199 11694272 ~ 11714719 (-) False map3k3

Expression Profile