RNA id: XM_043235951.1


Basic Information

Item Value
RNA id XM_043235951.1
length 2018
RNA type mRNA
GC content 0.48
exon number 2
gene id tmem100a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3486152 ~ 3490051 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agggacgCAGAGGCTCGTCTAGTGAATGAAAGCCTCACGCGGTCAGTCTCTCACAGGAGATCTTCGTCTGGAGCATAACGGGACTTTCACGTCTTCGGCTTGCTGAACAGGATCCGTGGAGGGCAGGATGGAAAACACGTGTGAGGTGTGGAAACCGGCACAGTAGAGCGTAGAGACGGCTCAGAGTGCGGCCGATGCCCCGAAACACGCTGACCCTCAACCCTGCGATGCCCACCGAGCTGCTTAAAGACACCATGACGATCCCCGGAGCTCCAGAGCGAATCCTGCAAGAGAAAACCAACAACAACGAGCCCCCTCTACCGCAGCCGCTGGCCGTCACCATCCCGCTGGTCAACGAGGGGCAGCTGACGGCGGCCACCGGCGGAGCAGAGCTGTCCTGCTACCGCTGCACCGTGCCCTTCGGGGTGGTGGTCCTGATCGCGGGGATCGTGGTGACGGCCGTCGCGTACAGCTTCAACTCCCACGGCTCCACCATATCGTATTTTGGACTGGTGCTGCTCTCGGCCGGGCTGGTGCTGCTCGCCCTGAGCGCCGTCTGCTGGAAGGTGcggatggagagaaagaaagagaggagacGAGAGAGTCAGACGGCACTGGTGGCCCATCAGAGGAGCATCTTCGCCTGATTCGACACAAGCACCAACTCAGAAACCTTCACGACGAACAAGTCAACGCGACACCCAGATGTTTCGCCTCAGGTCGGACCacagactgcaaaaaaaactatttctgcCTCCTTCCGGTGTATTAAAGAGAAGCCAGAACAGAAATTGTCCTTCTACAGAGACAAGAGGGTCTGAATCACTTGGATCACATGTGCCTTAATAGCCAATCTCGTTACAGCTTTGACGCCACTGAATTTCTAAACGTTGTGCGAGTTGTGCGACACTTAAGCAACGTTTGCGGATCCCACAGGAATGAACGAGAAGGGCTCTAAACGTATTTCCAATCGCAAAGTCATTGACTTCTTTtataaaagagcattttaaaaatgtaaaaatgagtaGTGAAGCCTCTCCTCCATTGACATCCGTCtgaaatggaaaatggaaacTGTTATTGGGAAAAAATGCAATTcgatttttttatgtcattaccAATAATGATTGAGAAATGTGTAAGTCAAAGCGTCATGTTTGGGACAATGTCCAAATAATTCGCTTTAAGGGGTAATGACACcccattttaatgtcattaaattaaattaaaactaaaaatcaaaaTGCTTCAGAATGGAAAGACAGACACCATCTTTGATTGGCTGGATTTTGCTCACGTTCCATCGGTTCACATAAAAGGGCGGGGTTTATGACGTATATTGCAGCCAGCCCCAAGGGTGCTAGAGATAAAAAGATCGGCACTGATGACCCACCAGAGGGCATCTTCTCCTGATTCGACAAAAGCAAGAACTCTTCATGACAAAGGAATGACAAACGAATCAAAGCATCAAAAGTGGTTGCCTAGGGTTTGGACAATAGACTGTGAAAAATGCAGGTCTTTTTCTCAAAGCCGCGGTATCAAAAACCCCCTCCTGAATTGCAACAGATGCAGTCACAAGTTTACAGTCGTGATACCACACCCCATTTTTTTAGCATCAACAAACTACATAAGAATAATGAACGAACGGACACTTGAAGATACATTGGAGTGATAAGAACTACCTGAAATGATGGGAGCGACATATTTTGAtagtaaatagattttttagtTCGGATCACATGGCACTGGTTTACATTGAGAGGGCGGGGTTTATGATTTATACTGCAGCCGGCCAGCAGGGGGCGGTCGACATGTTTTGGCCTTACTTTTCAAGACGTGTTTGGCACATTTGGGTCAGACAAACTGAAGGCTGTCAGAGAAATCGGAATGACGGTATTCCACGAACGACTCTCACGACGAGAGTTTGGGACAATTAATCGAGACGGACTCAGCTGCATGTGTCCAGATGTTGAGACACAgctgcaatataaaaaaaatcatctgctTAAAGTTCCAAT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24633 lncRNA upstream 9566 3384548 ~ 3476586 (+) True G16556
TU24622 lncRNA upstream 106607 3379281 ~ 3379545 (+) True G16549
TU24590 lncRNA upstream 209172 3276399 ~ 3276980 (+) True G16529
TU24552 lncRNA upstream 783951 2699280 ~ 2702201 (+) True G16492
TU24543 lncRNA upstream 818893 2660875 ~ 2667259 (+) True G16484
TU24630 lncRNA downstream 35853 3525904 ~ 3526906 (+) False mmd
TU24652 lncRNA downstream 50365 3540416 ~ 3540798 (+) True G16575
TU24655 lncRNA downstream 50906 3540957 ~ 3541640 (+) True G16576
TU24672 lncRNA downstream 78741 3568792 ~ 3569146 (+) True G16589
TU24687 lncRNA downstream 104626 3594677 ~ 3598203 (+) True G16598
XM_043235901.1 mRNA upstream 71065 3409777 ~ 3415087 (+) True cbx2
XM_043231127.1 mRNA upstream 79022 3401426 ~ 3407130 (+) True LOC122333486
XM_043231103.1 mRNA upstream 205597 3277169 ~ 3280555 (+) True LOC122333469
XM_043235036.1 mRNA upstream 213786 3269593 ~ 3272366 (+) True LOC122341575
XM_043235030.1 mRNA upstream 794890 2685610 ~ 2691262 (+) False LOC122341572
XM_043235399.1 mRNA downstream 20025 3510076 ~ 3526914 (+) False mmd
XM_043235401.1 mRNA downstream 20025 3510076 ~ 3526914 (+) False mmd
XM_043235403.1 mRNA downstream 20025 3510076 ~ 3525401 (+) False mmd
XM_043235407.1 mRNA downstream 20025 3510076 ~ 3525401 (+) False mmd
XM_043235404.1 mRNA downstream 20025 3510076 ~ 3525400 (+) False mmd
TU24613 other upstream 163098 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 202496 3282990 ~ 3283656 (+) True G16530
TU24318 other upstream 839402 2641212 ~ 2646750 (+) False sumo2b
TU24319 other upstream 839402 2641212 ~ 2646750 (+) False sumo2b
TU24296 other upstream 917153 2568084 ~ 2568999 (+) True G16347
XR_006250493.1 other downstream 20025 3510076 ~ 3525401 (+) False mmd
TU24749 other downstream 319157 3809208 ~ 3813303 (+) False LOC122332297
TU24797 other downstream 457572 3947623 ~ 3985611 (+) True G16667
TU24811 other downstream 479464 3969515 ~ 4033526 (+) True G16672
TU25218 other downstream 866981 4357032 ~ 4359304 (+) False LOC122340527

Expression Profile