RNA id: XM_043235962.1


Basic Information

Item Value
RNA id XM_043235962.1
length 3537
RNA type mRNA
GC content 0.40
exon number 5
gene id si:ch211-207b24.4
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7148922 ~ 7157297 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAAGGAACATTTCCTGAAAAATAGTACTATATATATGGCTAAAAACCCCGAGAATGTTGTACTTTCAGTGAAGACTTTAACAGGCAACACATAAACTGCAGACATGGCTTCAGCTCCCATGGAAGTGGCAGCCTTAGGAAGACCTCTGTTTCCTGGTATGCTTTATGACTGCCGCAAGGATTCCTTCATTCCAGGTGTTACTCTGTGGGATAAGAATTCACTAAGTGAAGATCTGGACTCCCGTCCCCAGCTCCAGACAGATTTGAAGCTCAGTAGCTCTGACTCGCTCTCTAGTAAGTCCAGTCTTATGGATATAAGCGCTTCTTTGAAGACCAGCTTCTTGGGGGGGCTGGTGGAGGTGGGAGGATCTGCCAAGTATCTGCATGACACCAAATCCTCAAACCAGCAGTCTAGAGTGACAATGTATTACAGTGAAACATCCAGATTTGAGCAGCTCACTATGACCCAGCTGGACAAGGTCACCTACCCTCAAGTGTTTGACCAGCAAACTGCAACTCATGTGGTTACAGCTGTACTTTACGGAGCTCGGGCCTTCATGGTGTTTGATCggacattttcagaaaatgagaACAAGGAGAATATTGAAGGAGAACTGAATGTAATGGTCAAGAAGATCGCTGCATTTTCAATTGAAGGAAAGGGAGCTGTACAAATGACAGCTAACGAAAAGGAGGTCGCTGAAAATATCAGTTGCACATTTCATGGTGACTTCCATCTCAAACAAAATCCCACCACATACATGGAGGCCCTGGATTTGTACAAGAAGCTCCCCACTCTTATGAAGGACAGTGCAGTTCCAGTAAAGGTCTGGCTTTATCCTCTTCACCTACTGGATAATAAAGCAGCTCAGCTAGAAAGAGAAATCAGCTCAGGTCTGGTTTCCAACACTCAAGATATAATAGAGGGGCTGGAGGAGGCAGAGAGGACATATAATGATCTGTCCAGAAATACACTTGTGAATGTTTTTCGTGACATTAAAGAGAGACTCAACTCATTTCAGgaatcatttaacatttacaggTCGGTGCTCCGGAAAGAATTGTCCATGGTCTTGCCTGTTATTCGAGGAGGAGGAATGGAGGAGAAGTCACTGGCTGAAATGTTAAAGATTCACTATGACTCCCCTTTTGTTGCTAGCAAGATTAACCAGTGGTTAGATGATGTGAAGTCTGAACTTCACCTCTTGAGCTCATACATCAAGATGCTGGAGGGGATCAAAATTCAAGATTCAGACAGTCTCAAGGCCATCCTCCTTAATCCTGATGTTGATTCTGTGGTGTGCTTGACTTTCACATCTCTGAAGTTTGAAGACCCGTATCTTGAATGCCTGACAGAGTTTCTGAAAATAGAAAGGTTTAAGAATTTAGATGAGGAAACAAACATGGTTCCAGTGCCTGCTGTCAAAAAGTGGTTCAGTGATCTTGATGTCATAATAAATATGAGAAATAACTTACTCCAGTTCAGAAGTTTTTCAGAGGCCAATAAAGATCAAAAAAGGATCTGCTTCATCATTTCTGCCATCTCTGATCCCTCAAAAAAAGGCTCCTCCATCTATCTGTATGAAAAAGGGAAgctgacaaacacacagttCCAGCCCAATTCCAAACCAATCCAGCCAATAATAAAGATACTCCCAGATGAAACTGTGTCCATCAAAATGCAGAAACCTCCAAATGGGGGAACAGTGCAGTACAGAGTGGAGTACAAGCAGatagaaaattattttggagCTGACCAACAGTGGCATGTCATTAACACTGATAATGAGGAGCTTATTCTGACTGGATTGAAATCTGGAAAAATGTACTGGATCCGCTACAGGATAGTGAGTACAGTAGGAGTGAGTGAAAACAGTGAGACCGTCTCCTTTTCACCAAGTTCGGtgCGTCCTCAGCTTGTGGGTGGGACAGGAGGTTCTGAATTCTCCTTTGTAACTTCCGCCATCAGCACCTTCAAAAAGATCACAGTTACTTATGGCCAGGATGGAAATACTTACCCCATGAAGTCAATCCAAATACTTTTCAGCAATGGTCATGTAATGGTCACTGGTAAGAGTATAGGGGATCACAAAAAGGAACTTCTTTTTGATGACAATGATAAAATAATCGCTGCAACACTGTGGtcagataaaaatataaacagactCAGTGGAATGGAATTTGTAGTTGTCAATGCTGGTGTCAGAAAAACCTTGTCTGTCATGTGTACGAATCAGGGTTACCCAGTGAGGCTTGATGTGAAGTCTGGAAAGTGTTACGGCATTATAGCAAAACATGGATCTGACATTGATTCTTTGGGTTTCTTCTTCATTTAGATGCCAGTGACTTAAAAGTATCACATCAATGAGTCTAAACCGTGATTTTTAGGTTTTCCGTGActatgtattttgcattttgttctgttttatttattgttttcacaAGTCTTTGTTACCTCTCGGTTTTGTGCAAAATACCTTTATGTCCATTGACAATATAAAGCTTAACttgatttttcttttggtgAAGATTCTATATCATCATatgatctttttatttaattggtaagctgttgttcttttttgatgtttaaagtaacaataattattatataaatcaaaaCAGTTGTATTTTCTTGTCATTAGCTTttccttttaatgttttagacAGCCcttaaacaaaatattcatatcAGGAATTccatattatgcattttaaatgtaatattataattaaagttacttaatataaaaaattttccCTGCTTTCACCTTCCTCAACCACACCCAAAGCGCGACAactacaaaacaataaaaaacgaGACAAGAGAAGGCTCTGTGACCcatagtttttaatttgaagCAAGGCTGATGGAGAAGAAGAGAATCAGCAGAGTGGGGAGGACGAGAAGGCAAATAAGGATTAACTAAATCACAGACATAAAGAGAAAATTCATGCACAGCTTTATAAGTTAAAACAAGTGCTTTAAACCCAATGCGCGACTGAACTGGAAGCCAGTGCAAGTTACACAGGACACCACTAATGTGCTGCCTTGAGGGACTGTGAGTGAGAACACGTGCTTCTGAGTTCTGACTATACTGTAGCTATACTGTAGACCAACACATAGAGAATCTTCAATTCTTACAGTGATAAAAGCATGGATCAGCCTTTCAGTAGCACAGAATGGAAAGTCCTAATCCTAGCAATATTACTGAAAcgataaaatgctgatttagtaACACTCCTAATATGTGCCTCCAGTGTCAAATTAACATCAAATATAACGCCAAGGTTACAAGCTTGTGAAGATGGCAGTACACAGCTTCAGTGTCAAATTAAAGCTGCTACATTCATGAATGGCTGCTGGCGTACCAATAAGTAAAACCTCAGTCTTAGAgctatttagttttaaaaagttgtgAAACGTCCATACTCTTATGTCCTGCAAACATTTAGAAAAGATTTCAGAACTAACTGTAACATGAGATTTGTACTGATGTATATTTGTGTCTTCAACATAAAAATGATACCCAAGA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26448 lncRNA upstream 172657 6922196 ~ 6976265 (+) True G17704
TU26442 lncRNA upstream 245761 6902746 ~ 6903161 (+) True G17699
TU26412 lncRNA upstream 301316 6846938 ~ 6847606 (+) True G17683
TU26380 lncRNA upstream 443517 6705195 ~ 6705405 (+) True G17663
TU26379 lncRNA upstream 444220 6704414 ~ 6704702 (+) True G17662
TU26565 lncRNA downstream 37485 7194782 ~ 7266722 (+) True G17791
TU26582 lncRNA downstream 108046 7265343 ~ 7282946 (+) True G17806
TU26584 lncRNA downstream 152877 7310174 ~ 7314152 (+) True G17808
TU26660 lncRNA downstream 235294 7392591 ~ 7392872 (+) True G17861
TU26661 lncRNA downstream 240942 7398239 ~ 7398465 (+) True G17862
XM_043233908.1 mRNA upstream 260117 6862409 ~ 6888805 (+) True ppap2d
XM_043234966.1 mRNA upstream 302281 6841019 ~ 6846641 (+) True tnfsf14
XM_043234964.1 mRNA upstream 315698 6796786 ~ 6833224 (+) True dnm2a
XM_043233639.1 mRNA upstream 464724 6679181 ~ 6684198 (+) True trim35-12
XM_043233643.1 mRNA upstream 470205 6670199 ~ 6678717 (+) True gipc1
XM_043225616.1 mRNA downstream 3457 7160754 ~ 7164555 (+) False LOC122329403
XM_043225607.1 mRNA downstream 3457 7160754 ~ 7164555 (+) True LOC122329403
XM_043235194.1 mRNA downstream 9237 7166534 ~ 7197688 (+) True tbcd
XM_043235263.1 mRNA downstream 84400 7241697 ~ 7251923 (+) True metrnla
XM_043228323.1 mRNA downstream 113653 7270950 ~ 7281036 (+) True slc16a5b
TU26266 other upstream 592172 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 592172 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 953900 6192740 ~ 6195022 (+) False LOC122341437
XR_006250506.1 other downstream 498735 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 792464 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 792507 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 793557 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 802774 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile