RNA id: XM_043235993.1


Basic Information

Item Value
RNA id XM_043235993.1
length 2008
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC122342177
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18531295 ~ 18537103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTGGACCCCCGCAACTGCAGCACTgATTTGACTCCAGACTATTCTATGGAGAGTCATCAGAGGGATCACGAGAACTTCCTGGTTGTGTCTCGGAATCGTCGAAGACGAGCCAAAGCTTTGCTGGACTTTGAACGGCACGACGATGATGAACTGGGCTTTCGGAAGAATGACATCATCACAATCATCTCACAGAAAGATGAGCACTGCTGGGTTGGAGAGCTGAACGGCCTGAGAGGCTGGTTTCCTGCAAAATTTGTGGAAGTCTTGGATGAACGAAGTAAAGAGTACTCTCTGGCTGGAGATGACACTGTAACGGAGGCAGTGAATGACTTGGTCAGAGGCACGCTGTGTCCAGCTCTTAAGGCCATCTTTCAGCATGGCCTGAAGAAGCCCTCCATACTGGGAGGACCCTGTCACCCCTGGCTTTTCATTGAGGAGGCAGCCAGCAGAGAAGTGGAAAGAGACTTCAACTCTGTCTACTCTAGACTGGTGCTCTGCAAGACATACAGGTTAGATGAAGATGGGAAGGTGCTCACACCTGAAGAGCTTCTATACAGGGCAGTGCAGTCTGTCAACATGAGCCACGACGCTGCACACGTTCAGATGGACATCAAGTTTCGCTCGCTCATCTGTGTGGGCTTAAATGAGCAGGTGCTGCATCTGTGGCTGGAGGTCTTGTGTTCCAGTATGAGTGCTGTGGAGAAATGGTACCATCCCTGGTCCTTCCTGCGCAGTCCTGGCTGGGTTCAGATAAAGTGTGAACTCAGAGTTCTTTCAAAGTTTGCCTTCAGTCTTTCCCAAGACTGTGAGCTGCCTACCAAAAAAGAGGAGAAGGAGCAGAGGCCTCTGAAGGAGGGAGTTCAGGACATGTTGGTGAAGCATCACCTCTTCAGCTGGGATATCGATGGCTAACCTATCACACGCTTCCTGTGAGCTGCAAACACCTAGACCAAATCACTCTCCATCTGCAGAAAAACAGGGATCACGCGTGAAATTCATGTTCATTCGTTGTACAGCTTTATGTCACATGGCTGAAAtggtgagtgtttgtgtgtctcgGCACAATAGTTTCACTTTTTGTGACTCTTACAAGAGTCCGTCTGTACAAAGGAGGAGTTCTTTGCCAAGATTTCACACAGAATCAGACTAAGGACTGCCTGAAAGCGCTTCCTCTCCTCCGAAGCTGAATAAATGTTACACCATTTGGGGCACGACTAGAGTGGTCATGAATTAAAGTAGGATTTGCACCCTTTTGTTCATTTACTCTCAAGTAGTCTTGGCTGCTGGTGACATCTGGatagtgggaaagagtccagcTCTTGCGCTCCTGAGGGATTGTCTTGAGCTAATTCAGTGTCTGGAGGATCACATTTGTGTCAGACATGCGCAATTTAAagattaaacacattttcattatcTTCAGACGACTTTCCAAGTATGATTGTTCCCAAAATagcttaataattaaaaaaatatcctgtGGGTACCACCCTCACATCCAGTTACATCCATGGCAGACTAAAAGATGGCCGTTGACAGAGAAACCGATTGACTGCAGTCAGTGTGTTCAGGCCGCAGCATTAAAACAGTTGACTGAATCTGCCTCAACACGAAGGGCACCGCTGATTCAGTGTTGATGGTGTAGCAATGAATCGGCTTTGTGTTACATATTTTGCTATTTCTCATAAACCGTGTATAATAAAGAGAAGACTAGTAtttagctgctttttttttttgagatagAAGTGAAACAGAAGCAGGTCCAGTGCCACTCTGAAGAAGAGCTGTGTGTGTCTTCTCTGCGAAAGCCTGCAGTGGCACAATTAGATGTTTgagtaaatgaaagaaaaagggtTCATTTTATAGTTCTTGTAATTGGTAGACATGGTTGTTTTGAACCAAAAATTAGTCTGTAATGGTTGAGCATGACCAAACTCGCAGGGCTTTAGATCATATCCACGATCACTGATTATATGtacctaaataaaaatctatatctgTAAAAA

Function

GO:      GO:0005097,GO:0032313

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31312 lncRNA upstream 372749 18158171 ~ 18158546 (+) True G21076
TU31309 lncRNA upstream 411869 18116538 ~ 18119426 (+) True G21073
TU31280 lncRNA upstream 488674 18035539 ~ 18042621 (+) True G21049
XR_006250480.1 lncRNA downstream 37584 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 38910 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 115258 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 165481 18702584 ~ 18703683 (+) True G21180
TU31495 lncRNA downstream 291583 18828686 ~ 18829253 (+) False LOC122341799
XM_043235959.1 mRNA upstream 13624 18507155 ~ 18517671 (+) True rab40c
XM_043235927.1 mRNA upstream 27257 18495594 ~ 18504038 (+) False pigq
XM_043235925.1 mRNA upstream 27257 18497150 ~ 18504038 (+) False pigq
XM_043235924.1 mRNA upstream 27257 18497738 ~ 18504038 (+) True pigq
XM_043235926.1 mRNA upstream 27257 18497742 ~ 18504038 (+) False pigq
XM_043229189.1 mRNA downstream 630 18537733 ~ 18539127 (+) True hsd17b14
XM_043235936.1 mRNA downstream 7931 18545034 ~ 18550427 (+) True LOC122342138
XM_043235682.1 mRNA downstream 13890 18550993 ~ 18566606 (+) True LOC122341960
XM_043235683.1 mRNA downstream 13890 18550993 ~ 18566606 (+) False LOC122341960
XM_043235684.1 mRNA downstream 13892 18550995 ~ 18566606 (+) False LOC122341960
TU31399 other upstream 13630 18443390 ~ 18517665 (+) True G21124
TU31393 other upstream 13630 18506130 ~ 18517665 (+) False G21124
XR_006250035.1 other upstream 106219 18405966 ~ 18425076 (+) True nubp1
TU31277 other upstream 429363 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 455721 18074397 ~ 18075574 (+) False LOC122341796
TU31466 other downstream 145251 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 188858 18725961 ~ 18732098 (+) True G21182
TU31492 other downstream 188858 18725961 ~ 18729368 (+) False G21182
TU31493 other downstream 196062 18733165 ~ 18733765 (+) True G21183
TU31398 other downstream 298556 18835659 ~ 18843419 (+) False G21124

Expression Profile