RNA id: XR_006248070.1


Basic Information

Item Value
RNA id XR_006248070.1
length 236
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC122330717
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1942689 ~ 1943729 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCCTTCCCTGTTTTATGCTTGTCATAGCTACAAAGACCTGGTTAGTTTTTCAGACTtgcaacacacaaaaatgtttcacGAATCAAGACTCATTGATCCTGAAGACCTGCGGAGAGAATTGACCCACTATGATCCTGAAGAACTAAGAGCAACTGTAGGCTCTGAGACTGAAAACCAAGAATCAAGGCGACATGAACATGAAAgTAACCCTGAAATAATTTATAGCACGCAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23808 lncRNA upstream 51662 1871280 ~ 1891027 (+) False G16017
TU23807 lncRNA upstream 69169 1871280 ~ 1873520 (+) True G16017
TU23770 lncRNA upstream 77460 1619907 ~ 1865229 (+) False G16002
TU23827 lncRNA upstream 87005 1854895 ~ 1855684 (+) True G16033
XR_006248080.1 lncRNA upstream 116372 1824790 ~ 1826317 (+) True LOC122330751
TU24127 lncRNA downstream 80619 2024348 ~ 2320138 (+) False G16222
TU24151 lncRNA downstream 84665 2028394 ~ 2030843 (+) True G16233
TU24161 lncRNA downstream 99922 2043651 ~ 2046384 (+) True G16243
TU24140 lncRNA downstream 106456 2050185 ~ 2056000 (+) True G16226
TU24129 lncRNA downstream 112952 2056681 ~ 2320138 (+) False G16222
XM_043230813.1 mRNA upstream 896 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 72079 1867624 ~ 1870610 (+) True LOC122330213
XM_043230436.1 mRNA upstream 212692 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 214996 1711295 ~ 1727693 (+) True LOC122329718
XM_043227012.1 mRNA upstream 242026 1694985 ~ 1700663 (+) False LOC122330144
XM_043226579.1 mRNA downstream 58950 2002679 ~ 2010431 (+) True rangap1a
XM_043235918.1 mRNA downstream 187489 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 216617 2160346 ~ 2165693 (+) True LOC122333054
XM_043235185.1 mRNA downstream 317881 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 323859 2267588 ~ 2270464 (+) True LOC122341669
unassigned_transcript_275 other upstream 76904 1865713 ~ 1865785 (+) True trnar-ccu_2
unassigned_transcript_274 other upstream 291961 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23775 other upstream 296157 1644778 ~ 1646532 (+) False G16003
TU23777 other upstream 296261 1644778 ~ 1646428 (+) False G16003
TU23799 other upstream 319295 1620931 ~ 1623394 (+) True trnar-ccu
TU24128 other downstream 112952 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 112952 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 114948 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 168308 2112037 ~ 2114339 (+) True G16223
TU24191 other downstream 217116 2160845 ~ 2165614 (+) False LOC122333054

Expression Profile