RNA id: XR_006248084.1


Basic Information

Item Value
RNA id XR_006248084.1
length 766
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122330767
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 781983 ~ 783076 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGGGATTTTGTTCTGATTTTCAAGAAGTTAGAAGTTTGTTAGTGTGATTAGAGTTTAATCTATTTGACtaatcattaattattcatgttttgaCAAATACAATGCCGATATGAAAGAAGACAAGTTATAAAGCATCAATCAATCATCATTATTTTCCTGTGACTAGATTTATTTGCATCACACAGCGAGTGTATGAGCAGATAAGACTGATTTCTTAATCACAACTTCTGTGACGTATTATTAGCTGCTTTTTCACTATCAGGCAGAACGGTTAAGAACAGTCAGGTACGGGTCACGTTCAGACAACTGTTATGTGGTGTTGCCCTGTTATAATGATGGAGGGCCTGaaggtggagtggaaaagaaaagaggatCTGGTTCATCTGTATAAAGATGGTGCGAGTCAAGCAGAGGAACAACATGAAGATTATCAGGAGAGAGCTCATTTCTTCACTGAGCACCTTAAAGATGGAAACTTCTCTCTCCGTCTGGATGATCTGAGAGCTGAAGATGAGGGACAGTACACATGTACAGTTCACTTTCATGGTTTTCGTCgctcagaaataaataattcaaaataacaggCAGTTTTCAACCAATACAAAGTTGGTACTGAAACTACTTGAACCAGTCTTCCGTCTTCAGATGTTTCTGGTCTTCTGTCCAAATGTCCTGATGTTTCTGGCGTTTGTTTTCTGGGCTGTTTCTGAAGGATCTCTGTTTGAGTCCGTCTCTTGttgttctctttattttctgaGACCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23041 lncRNA upstream 84274 695997 ~ 697709 (+) False LOC122330711
XR_006248068.1 lncRNA upstream 84425 695751 ~ 697558 (+) True LOC122330711
TU23045 lncRNA upstream 85152 695997 ~ 696831 (+) False LOC122330711
TU23164 lncRNA upstream 103888 677066 ~ 678095 (+) True G15586
TU23110 lncRNA upstream 259311 520750 ~ 522672 (+) True G15550
TU23167 lncRNA downstream 10174 793250 ~ 815066 (+) False LOC122330666
XR_006248050.1 lncRNA downstream 25233 808309 ~ 815075 (+) False LOC122330666
XR_006248049.1 lncRNA downstream 25288 808364 ~ 815075 (+) False LOC122330666
XR_006248048.1 lncRNA downstream 25567 808643 ~ 815075 (+) True LOC122330666
TU23169 lncRNA downstream 28487 811563 ~ 815066 (+) False LOC122330666
XM_043227493.1 mRNA upstream 6449 754430 ~ 775534 (+) True LOC122330463
XM_043227501.1 mRNA upstream 6449 754430 ~ 775534 (+) False LOC122330463
XM_043227358.1 mRNA upstream 28270 743953 ~ 753713 (+) True LOC122330397
XM_043226129.1 mRNA upstream 70582 699715 ~ 711401 (+) False LOC122329668
XM_043226120.1 mRNA upstream 70582 700578 ~ 711401 (+) False LOC122329668
XM_043229640.1 mRNA downstream 334 783410 ~ 792668 (+) True LOC122332312
XM_043226920.1 mRNA downstream 61527 844603 ~ 846445 (+) True LOC122330100
XM_043226983.1 mRNA downstream 222907 1005983 ~ 1009431 (+) True LOC122330135
XM_043227127.1 mRNA downstream 228235 1011311 ~ 1013643 (+) True LOC122330251
XM_043229905.1 mRNA downstream 234631 1017707 ~ 1019352 (+) True LOC122332569
XR_006248020.1 other upstream 13011 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 146374 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 224902 553698 ~ 557081 (+) True G15563
TU22959 other upstream 482662 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 706349 73544 ~ 75634 (+) True LOC122331567
TU23504 other downstream 222919 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 264927 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 507893 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 607663 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 612771 1395847 ~ 1402168 (+) False LOC122330032

Expression Profile