RNA id: XR_006248186.1



Basic Information


Item Value
RNA id XR_006248186.1
length 1672
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC122331402
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8312389 ~ 8314490 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cagaggtgaggagggtgtcataaagcCACAGGtggtgtttactctctttttgaagtccttttgttcctttggatatcccttctcagatcggTCTTATTACAGGTTTATGATTTCGCTCCTTACATCACTGACCTGACCTGCGTTTTATTCTTGGAGGAAATCTGACGTGTCTTTATTGGAGACAAAACCAGCACACTTGTGATCAAAGGCCTGCCGTTTCCTTCAATCTGAGGAACAGTCGTAATGCTTCCTCCCAGTTACATGGATTGTGTTTCACTGCAAATTCGACATGTTCCTGGATGTTTTAGTCATTGTCAGCCTCAACTTATCTTCTATAACCTCAAAGTGTCTTGATCTATACCTGCAAGAGGATTTCTGTTTCCATTTAGTGTTCCACAGTCAGTTGGGTCTCATAGATACAACACCAAGCGTTGAACACAAGTGTCCCCATCAGTGACGTGTCTTCTGTCCTGTCCATCGTGGGTTAAGTTCTTGCATCAAACAAACGACACGCATAGGTTTAACATACACCCTGTATTTCTGCACAACCTCTCTGTTATTACTGTGTTTCTCACGTTGATTCATGGAAAAGAGCCTGAATCCTCAGGTGTTCACGCACACACAGTTCCAGCTCACTTTGACTGTCACGTGTTTGGTCCAGTCAGTCTTCATCTTCTggtttgtctgttttgtcatcgttttttttaacttgttgttgtgttttctgAATTGTTATTGTGATTCAGGGATTTgcgttaaaaatgtattttgtgttcagatttgtgatttgtttttcacttcTCGGCCACCATGCAGTAGATTATTCATTTGCTATGGTAATTTATTAATTAGAGGAAAAGATGCATTGTGATGCTTAATCAAAACCATAATCCAATCAAATTGTTTCACAACAGTGGTTTAATATAGATATCAGCAGGGttggttttattttgcaattattttttgcaattttataaaGTGTTTCCTTCCTGAACaaaatttaacaaatttaattgtaactaagttacatgttttttttgcaagcatTTCAGATGTatttaaaccaaacaaataaTTTGCAATCACTTACTGTCAGAATTAACAAGACGTACTATCCACTAAACCCCCTTCAGACAGTGAACTACAGCAGAGAGACTGAGACACGGACAATCTCTTATTATGACCTCTTCTGTGTACAGCTGCAGCGCAATAAATCAGAATTTCAGTAaatcaactcaaattgtgaaacttgcgtgttaaataaattcagtgcagaCACACTagttatttaattcttttttttaattatgattttggCTCATAtgtaacaaaaacccaccaatctCAACAAATGACAACACGGTGACATGCCAATCAGCTAATCACTGCAACACCTGCAAaggtctctcagtttggttcactatTCTTCTCAATCCttgtgtcacgtctttggatcctttgttgttgtttttgtcttgtgtcgTGTGCTCGGTGTTCCCTACCTCTATTcgtgttaattgtgtcattgtcctcacctgtgtctagttaatttagtgatttccttgtgtatttaagtcctgtgtttgtATCGTCGAGGTTTatacgtgtggtttatgttctgcctgtctGGCTGCCTAGAAGATTTgaagaagattaaaactgtttaagttta

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU26881 lncRNA upstream 95172 8215252 ~ 8217217 (+) True G18010
TU26897 lncRNA upstream 95358 8216524 ~ 8217031 (+) True G18025
TU26839 lncRNA upstream 167364 7984480 ~ 8145025 (+) False G17990
TU26856 lncRNA upstream 202620 8015637 ~ 8109769 (+) True G17998
TU26887 lncRNA upstream 208972 8103050 ~ 8103417 (+) True G18016
TU26949 lncRNA downstream 159803 8474293 ~ 8490417 (+) True G18055
TU26937 lncRNA downstream 199659 8514149 ~ 8742302 (+) False G18048
TU27001 lncRNA downstream 357171 8671661 ~ 8675886 (+) True G18092
TU27278 lncRNA downstream 566708 8881198 ~ 8882122 (+) True G18261
TU27283 lncRNA downstream 672563 8987053 ~ 8988610 (+) False LOC122341292
XM_043225548.1 mRNA upstream 11629 8296132 ~ 8300760 (+) True wbp2nl
XM_043235764.1 mRNA upstream 82775 8227784 ~ 8229614 (+) True rrp7a
XM_043235766.1 mRNA upstream 85035 8219924 ~ 8227354 (+) True poldip3
XM_043235765.1 mRNA upstream 85194 8219924 ~ 8227195 (+) False poldip3
XM_043233971.1 mRNA upstream 105308 8201599 ~ 8207081 (+) True ndufa6
XM_043234658.1 mRNA downstream 178931 8493421 ~ 8494226 (+) True LOC122341286
XM_043234659.1 mRNA downstream 179205 8493695 ~ 8498279 (+) True LOC122341287
XM_043229399.1 mRNA downstream 229801 8544291 ~ 8551147 (+) True LOC122331854
XM_043235544.1 mRNA downstream 237596 8552086 ~ 8556310 (+) True LOC122341872
XM_043235902.1 mRNA downstream 243188 8557678 ~ 8563379 (+) True LOC122342110
TU26858 other upstream 159564 8150770 ~ 8152825 (+) False LOC122341282
TU26861 other upstream 159564 8150770 ~ 8152825 (+) False LOC122341282
TU26879 other upstream 252532 8056659 ~ 8059857 (+) True G18008
TU26834 other upstream 346195 7964749 ~ 7966194 (+) True G17988
TU26833 other upstream 350094 7960071 ~ 7962295 (+) False LOC122341279
TU26932 other downstream 198859 8513349 ~ 8516454 (+) False G18048
TU26936 other downstream 198859 8513349 ~ 8524734 (+) True G18048
TU26987 other downstream 229970 8544460 ~ 8551151 (+) False LOC122331854
TU27323 other downstream 870038 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other downstream 870038 9184528 ~ 9185581 (+) False LOC122341719

Expression Profile


XR_006248186.1 Expression in all Baseline Samples

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XR_006248186.1 Expression in each Bioproject

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XR_006248186.1 Expression in each Sample
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