RNA id: XR_006248988.1


Basic Information

Item Value
RNA id XR_006248988.1
length 245
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC122335640
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28319710 ~ 28320156 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGCGATTTTAGGCCCTGTCATTTCAATGATCTTAAGAGCCCGGAGaTATCTGTGATCAGCAACCCTTCCACGAATCACCGTCCTGCAGACATACCTCCAcaatacaatgaaatataaataaatataataaaaagggAGCCAGTAATGTGATCCGGCAGTGAGCTGCTTTCCAGTTTCCCAATGATTGTTATTTGTAacaatgtgtatgtgtatttaagacgctaataaaaaaaaaatatcctga

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35738 lncRNA upstream 84174 28227075 ~ 28235536 (+) True G23953
XR_006248990.1 lncRNA upstream 283552 28034400 ~ 28036158 (+) True LOC122335654
TU35716 lncRNA upstream 374494 27942182 ~ 27945216 (+) True G23931
TU35622 lncRNA upstream 503521 27753439 ~ 27816189 (+) True G23873
TU35756 lncRNA downstream 8309 28328465 ~ 28329411 (+) True G23964
XR_006248991.1 lncRNA downstream 73585 28393741 ~ 28394538 (+) True LOC122335662
TU36004 lncRNA downstream 383874 28704030 ~ 28705144 (+) True G24132
TU36022 lncRNA downstream 388624 28708780 ~ 28715865 (+) True G24138
TU36023 lncRNA downstream 389750 28709906 ~ 28716193 (+) True G24139
XM_043234723.1 mRNA upstream 1 28316600 ~ 28319709 (+) True LOC122341391
XM_043232590.1 mRNA upstream 247133 27574258 ~ 28072577 (+) False LOC122334574
XM_043232688.1 mRNA upstream 251611 28036420 ~ 28068099 (+) True LOC122334736
XM_043233349.1 mRNA upstream 367253 27951751 ~ 27952457 (+) True LOC122335462
XM_043233179.1 mRNA upstream 589818 27728274 ~ 27729892 (+) True LOC122335347
XM_043232766.1 mRNA downstream 272648 28592804 ~ 28650650 (+) False LOC122334878
XM_043232783.1 mRNA downstream 272653 28592809 ~ 28650650 (+) True LOC122334878
XM_043232794.1 mRNA downstream 272653 28592809 ~ 28650650 (+) False LOC122334878
XM_043232788.1 mRNA downstream 272653 28592809 ~ 28650650 (+) False LOC122334878
XM_043232797.1 mRNA downstream 272653 28592809 ~ 28650650 (+) False LOC122334878
TU35581 other upstream 1037304 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 1472353 26846723 ~ 26847357 (+) True G23695
TU35299 other upstream 1518315 26798811 ~ 26801395 (+) False srsf2b
TU35969 other downstream 195487 28515643 ~ 28560324 (+) True G24115
XR_006248835.1 other downstream 272659 28592815 ~ 28647092 (+) False LOC122334878
TU36019 other downstream 387157 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 523685 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 908597 29228753 ~ 29230230 (+) False cenpx

Expression Profile