RNA id: XR_006248990.1


Basic Information

Item Value
RNA id XR_006248990.1
length 671
lncRNA type intronic
GC content 0.37
exon number 2
gene id LOC122335654
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28034400 ~ 28036158 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctttacttcTTGTAAACCTGTGTGGAACACTCAACGCCGGAGACACTGAGGCGAACAGAAGAGTTGGACTCTATAATAATTAACGGCTCATTGCAGTGAAACGCTTAATGAGATGTCGCTGAGGTTTCTTCTCCAGAGCTGAGTGGTCTCCACCTCTACGTACTCCTCCACCTTGAAAACCTATAAACCTCACTGCGCTGGGTCTCAGTTAGATTTTtattggagatttcttgaagacttcttgccaATGACTACAGCAAACACTCCTGCTTTACTAAGAATCTCCTGGTGTCTtctaaaaagaagctaaaaaactTTCCAATGTTGGttaattgttgtcttttttttttaaagggtcgTTGGGAGCGAGGACAGAGGAGCGAGAAGCTgagctgttttctatgtgaaatgtattttagacTATGCATATAGAAACATTATGCCGAATAATTTTAGTCGAGAGCTTCACTTTTCTTATGTTTTGTAAAGTTGAAAACAAGCAAGCCGTAATGTTCATGTGATCAAACCTTGCTTACAGCAGGCAGAATACAAGTTATGATGTGTTTTAcaagaaattaagtttttagaTACTTGTGCTTCATAAAGTAAATGTACATGTTATAATAACCATGTTTAAATTATTCCAAATAAACTTTGCTTATAAGCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35716 lncRNA upstream 89184 27942182 ~ 27945216 (+) True G23931
TU35622 lncRNA upstream 218211 27753439 ~ 27816189 (+) True G23873
TU35707 lncRNA upstream 228067 27804611 ~ 27806333 (+) True G23924
TU35636 lncRNA upstream 234171 27734542 ~ 27800229 (+) False G23878
TU35637 lncRNA upstream 234171 27734542 ~ 27800229 (+) True G23878
TU35738 lncRNA downstream 190917 28227075 ~ 28235536 (+) True G23953
XR_006248988.1 lncRNA downstream 283552 28319710 ~ 28320156 (+) True LOC122335640
TU35756 lncRNA downstream 292307 28328465 ~ 28329411 (+) True G23964
XR_006248991.1 lncRNA downstream 357583 28393741 ~ 28394538 (+) True LOC122335662
TU36004 lncRNA downstream 667872 28704030 ~ 28705144 (+) True G24132
XM_043233349.1 mRNA upstream 81943 27951751 ~ 27952457 (+) True LOC122335462
XM_043233179.1 mRNA upstream 304508 27728274 ~ 27729892 (+) True LOC122335347
XM_043233192.1 mRNA upstream 304508 27728324 ~ 27729892 (+) False LOC122335347
XM_043233185.1 mRNA upstream 304508 27728336 ~ 27729892 (+) False LOC122335347
XM_043232585.1 mRNA upstream 425263 27574258 ~ 27609137 (+) False LOC122334574
XM_043232688.1 mRNA downstream 262 28036420 ~ 28068099 (+) True LOC122334736
XM_043234723.1 mRNA downstream 280442 28316600 ~ 28319709 (+) True LOC122341391
XM_043232766.1 mRNA downstream 556646 28592804 ~ 28650650 (+) False LOC122334878
XM_043232783.1 mRNA downstream 556651 28592809 ~ 28650650 (+) True LOC122334878
XM_043232794.1 mRNA downstream 556651 28592809 ~ 28650650 (+) False LOC122334878
TU35581 other upstream 751994 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 1187043 26846723 ~ 26847357 (+) True G23695
TU35299 other upstream 1233005 26798811 ~ 26801395 (+) False srsf2b
TU35969 other downstream 479485 28515643 ~ 28560324 (+) True G24115
XR_006248835.1 other downstream 556657 28592815 ~ 28647092 (+) False LOC122334878
TU36019 other downstream 671155 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 807683 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 1192595 29228753 ~ 29230230 (+) False cenpx

Expression Profile