RNA id: XR_006248999.1


Basic Information

Item Value
RNA id XR_006248999.1
length 858
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122335688
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28718032 ~ 28719109 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAACTGGATAATAAACTGACTATCAGTTATGTGTCGTTAATGATATCTACCTTGTAAGTGCACTTACCCTGCACATAACCCGTGCAGTTGCTAAATGTTCACTAATAAGTTTTTGGAGATAACCTGCCAAATTTTAATTGCCTCTGAATATTTCAGTTCCTAAGATTTTCACTACTCGTGGCTACTAGAGACCTGATATGCACCACTGCTGAATCTACAAAATCCAAAGAGTAATGATGGCGGTGATCAAATTTGGTGATGAAGCCAATTCATAGATAAAGGGGGCctgtttaaattcatttaaagaaatttaaaatggCACTTCATGAGAAAAAGGCAGCCCACCCCAGGGTAAACTAACAATCGTTCTCCATCTAGCTATTTATTGCCTTTGTTCACAACAGGAACATCTAAAACCTGAGGGGGAAAGTCTTTATAAACCTATTTGTGCATGTAGATTGGTGTTTGAAGAGCCTGGAGGTAGCTGACGCTTTTGTACTTGCATAGCATTGACGTCCGTGTGGAGGCTCATCAGAATCTCAAAAGCTGATGTTTATGCAATTTCACGCGGGATGAAATTTAATACGTACCCGCTCGATTGCGTTTGCCCTACTGTGCATTACCCTAAACCCTCCTTTACACGCCTTTAAAAAGCCGAGTGATCTTCGTTCACATAGTCCTCAACCGTCGACAGCCGAAGGTGAAATTTTAATTCGTATGCTCTTGCTGGCTTGCAAAGGGACTGAAATGGTTCTTCGACACAGGATTTCAGTTTCATTCCTCATCCTTTCAAATCTGATCGCGGTTTCAGCAGAATCATGTGACAATCGATGTCTGGCAAATTCTGTAATTGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36023 lncRNA upstream 1839 28709906 ~ 28716193 (+) True G24139
TU36022 lncRNA upstream 2167 28708780 ~ 28715865 (+) True G24138
TU36004 lncRNA upstream 12888 28704030 ~ 28705144 (+) True G24132
XR_006248991.1 lncRNA upstream 323494 28393741 ~ 28394538 (+) True LOC122335662
TU35756 lncRNA upstream 388621 28328465 ~ 28329411 (+) True G23964
TU36034 lncRNA downstream 38586 28757695 ~ 28831744 (+) True G24146
TU36039 lncRNA downstream 83155 28802264 ~ 28802611 (+) False LOC122341400
TU36060 lncRNA downstream 135854 28854963 ~ 28855171 (+) True G24169
TU36061 lncRNA downstream 139776 28858885 ~ 28859136 (+) True G24170
TU36063 lncRNA downstream 143164 28862273 ~ 28862502 (+) True G24172
XM_043234728.1 mRNA upstream 3519 28711703 ~ 28714513 (+) True LOC122341396
XM_043234727.1 mRNA upstream 9424 28707031 ~ 28708608 (+) True LOC122341395
XM_043233130.1 mRNA upstream 59543 28653093 ~ 28658489 (+) False cacng5b
XM_043233148.1 mRNA upstream 59543 28653095 ~ 28658489 (+) False cacng5b
XM_043233138.1 mRNA upstream 59543 28654085 ~ 28658489 (+) True cacng5b
XM_043234729.1 mRNA downstream 1438 28720547 ~ 28721944 (+) True LOC122341397
XM_043232830.1 mRNA downstream 16890 28735999 ~ 28737619 (+) True LOC122335069
XM_043233439.1 mRNA downstream 66423 28785532 ~ 28789067 (+) True LOC122335596
XM_043232811.1 mRNA downstream 73943 28793052 ~ 28797759 (+) False LOC122335014
XM_043232823.1 mRNA downstream 74006 28793115 ~ 28797759 (+) False LOC122335014
TU36019 other upstream 9433 28707313 ~ 28708599 (+) False LOC122341395
XR_006248835.1 other upstream 70940 28592815 ~ 28647092 (+) False LOC122334878
TU35969 other upstream 157708 28515643 ~ 28560324 (+) True G24115
TU35581 other upstream 1435626 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 1870675 26846723 ~ 26847357 (+) True G23695
TU36055 other downstream 124732 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 509644 29228753 ~ 29230230 (+) False cenpx
TU36401 other downstream 672809 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 720840 29439949 ~ 29442655 (+) False LOC122335508
TU36431 other downstream 780414 29499523 ~ 29500119 (+) True G24436

Expression Profile