RNA id: XR_006250423.1


Basic Information

Item Value
RNA id XR_006250423.1
length 3655
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122341104
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3987526 ~ 3991553 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCACAGGTAAGCCGCAATTATTAAGAGATTAAAATGTCTCAAATGTCTCTTTAGTGTaagaacaatttgttattttaatctttGTCATACAGccctaataaatatttagttttgcagcaaataattaaaaatacaaataaatgttacctttaaaacacaaataaaaggaATTTAACTATTTATGAAGCCATTCCTAATTGAATTGATCCACTGAACCAAATTCATAGATTTGAtgtaaaacttaaattaaaaatacattatttactgaaaataaatgatccaCTGAGAGCATTGGTTATGAATTTCATAGTTCATAAGTGATAACTTTACAGTCTTGTGTCAGGCAAGAACAGCaattttaaagtgcactttGGATTTTGACACTGACCTGAATTTCTGCTATAATACAGTtcaaaaaatgacagaatatgGAACTGTTTATATGTGCTGAACTGAGTTGAACTCTTTCAATGGAACAACTTGTTTTCTTTAGTAAAGAGGAGAAAACATACTATGGAGATCAATGGTGAACCAAAACAGcttggttacaaactttctttaaaatatcttttcgACTAAACAGGTTTAGAACTACttgaaaatgacagaattttcattttcttttaagtttGCTTATACAAATAAACTACAGAGTAacatgcactcttaaaaataaaggcactTAAAAAGTTCTTCACAGTGACgtcatagaagaaccatttttggttccacagaAAACCAATAAgtgaaaggttctttaaagaaccgtttttttacctttttataatctgaaaaaCCTTCTTTCGccacaaagaaccatttgtGAAACGCAAAGGTTCTTCATTTAaccatttacataaaaaaggtTATTCTATGGCATTGTGTGCATTGagtgtacagtaaaaattaacaCACGACTATATAACATATGACAAGAGTGTACAGTAATTACTAACACATGACCACGTAATGCATAACGAAGATATaaccaaaaacaattacaaaccATTAATTCCTCCTTTGGATTATGCagtaaactttttaaataattatgagaCACCAGGTTTTGTAAATTCATCAAAAGGTTATTGCAACTTTTAAATAAGATTCTAATCTAAAGTcttttgaatttaataaaaaactgaaaaaataaatcttaaacaaTAAATCTGGCTCTAGTAATAATATGTCGCCATCTACAGTATCACAGGTCATTGATcaatatcaataaaaacacaagcacctactaaaatgatttaagtACAAAAAGACAGGTATAAAACTGCAGTTAAAAGATCTTTCATCATGCATGTTATACAGTGAAATCTAAGGggatgtaataataataaattcaaacagcttttaaaggCACTTTTggtaaaagtgatttaaaaaaagccaatgACATCTACTTTCCAAAGGTCTGATTTGGGTTATTTATTGAGTTGATGATAAATTGTGTTTGTCCAGTAATAGATCACCAGTCCAAAGGTAAATCATCTGGGTCTCTTCTTTTAAATCCAAATCCACTGCATTTCTGACACCTGAAAGGTAAAGAGTTCAGATCTCATCACCGCCGGATCCACAGACTCTTTCTGGAGCTTTGACCAGCTCCGTAACCATTTGTGAGACCATTATGGCTGCTATAAACAGCTCAATTAAGGCATAAAAGAGCACACGTCTAACACAACATACATCAAATCTTACATAAGAAACCTTGATGTGTCCctgcacagaaaaacaaaagtgtatCTGGATTACAATCAGCcatcaaaatgatttgttgacatttaattattctagCTATAATTAGTTAAACTAGTTAATTAAAGTAGGCTATAATTAAACGATGCGCCTCCAGCGAAAACCTCCACCAAATGAGGCCGTAGGACagcttctttatgtttacagacgtGACGTAATGATGCAGTGCCATGCCGGGATTTCCCACGAAAACCCACCCGTAccactcaaaataaaaaatatcattgtAAGCTAATCGTTGTGAATTGAGGTAAAGTAAGGCAATggttttgaacactggctggttatgtacttgctcaaatattgattttggataattgttaaccaaaaaaatgttacagactgcagctttaaagaTCAAAAGGATCTTTGCACATACACTCATATACACATTTTTCTCATTGTCATACCAACTTTACATTGACAATatcaaaccatttttaaaaacgtaaaaagaTTTATTGCTGACATTTTATTGCTGTGGTTTaaacgttatttaaaataatgtgtgacGTTGTCCATTTGTCAGGGTGTGGTTTGCGAGAGAAGGAGCGCTAGACGAGAATGCTACAAACATAAAGCttccaaacacaaaagaaacaatatCCTTACAAATAGGCAGGCAGAAAATAACCACACATATAAACGACGaccggacaaactgaactgaaacacacagggaataaatacacaaagtaattgactaaattaacaagacacacctgagcATAATGAGACAATTAGGAGCAACGaaaaagtagggcacacagagcacatgggacaaatcaaaacaacaacaaaagagtccaaagacgtgacaccATTAAACAATAGTAAGGAAGTGAACCCAGAAATATATGTGTGACATGAACAAGTTACATCAAATGTATTTGCATTGCTTATATGTTGCTCAAATTATTGTGCATATCATCTTTCATTAGAAAATGATGACAACGGCAGCAGCATTATGGATGGAAGATCCAATTCAAGCGGTGATGTGTCTGCAGTAGACACCAAATAATGAAGCGACTTTAAGTCATGCAGTTGATGTGAGAAACGGTTCTTCAGCTGCCATCCGTCCTGGTTTCCCTGTCTCAGGCAGAAGACCACCGGCTGGCACTTTGAGTGATCTGAGGGTAATCGTGAGAGCGTCTCCACCAGGTCCATGCCCGCAGACCTCCCTAGGTGGAGAGGGCGGTTGTGGTGCACTTGTGCCCACAAAACACATCCGGGGGCAATCGTCCACGTCTCCCTTCCCGGCCCTGTAGGACCACGGTAGCTCTCAGTGCTAAGGCTTACACTGCAGCTGGTCAGGCTGCTTTTGCCTTGCATGCCACGGCTATCCTGCAGGACCAGCAAGTCAAGGCACTGAAACAGCTGCATGAGGGTGAGTCTGACCCGCGGTTGATGCAGGAACTGCGCACGGCGACCGACTTTGCCCTCTGGGCAATGAAGATCATGGCAAGGTGCCTTGGGAAGGCGATGTTCACTTTAGCAACCCAGGAGCGCACTTATGGCTCAATCTGGTGGAAATGAAGGACGTCGAGAAGGTCCGCTTTCTTGAAACCCCGATCTCTCAGGCTGGGCTATTCGGCGACACTGTCGAGGACTTCAACGGCAGGCCAAGGCGATCCAGCACATCTTTTAGGCGTGTCTCTTTAGCTGCCAGTGTTGAGTCCAGTCGCCCCGTGCTGAGACCTAGTCGAGGTCGGCACATCGAGCCTCCCGCAGTAAGGTTCACAGCTGACCTCTAAGTCCTCTAGGAAGATGACGAAGAAGCCCAGGGATGGGCGGCCCGGAGAGGCAATAGACTGCTTTTCAGGAGGTGGGGAGCTCAGTAGCACTCTTTCCCTCGGAGGAGGGCCGTGTGGAGAATCCTTGGATTACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24793 lncRNA upstream 42487 3944601 ~ 3945039 (+) True G16664
TU24780 lncRNA upstream 104821 3881900 ~ 3882705 (+) True G16651
TU24766 lncRNA upstream 126241 3838870 ~ 3861285 (+) True G16639
TU24725 lncRNA upstream 166099 3815723 ~ 3821427 (+) True G16619
TU24721 lncRNA upstream 172299 3800652 ~ 3815227 (+) False G16619
TU24809 lncRNA downstream 11182 4002735 ~ 4007765 (+) False G16672
TU24804 lncRNA downstream 18027 4009580 ~ 4022148 (+) False G16672
TU24816 lncRNA downstream 26980 4018533 ~ 4023201 (+) True G16675
TU24829 lncRNA downstream 27694 4019247 ~ 4019689 (+) True G16685
TU24831 lncRNA downstream 32645 4024198 ~ 4035062 (+) True G16686
XM_043231164.1 mRNA upstream 36871 3947832 ~ 3950655 (+) True LOC122333504
XM_043234139.1 mRNA upstream 49104 3928348 ~ 3938422 (+) True LOC122340641
XM_043234359.1 mRNA upstream 71090 3912009 ~ 3916436 (+) True LOC122341043
XM_043234367.1 mRNA upstream 71090 3912022 ~ 3916436 (+) False LOC122341043
XM_043235966.1 mRNA upstream 86077 3895268 ~ 3901449 (+) True sstr5
XM_043234096.1 mRNA downstream 130206 4121759 ~ 4134915 (+) True cfap70
XM_043234236.1 mRNA downstream 144317 4135870 ~ 4145083 (+) True hmox2b
XM_043234242.1 mRNA downstream 144926 4136479 ~ 4145083 (+) False hmox2b
XM_043234107.1 mRNA downstream 163517 4155070 ~ 4274967 (+) True coro7
XM_043234113.1 mRNA downstream 163520 4155073 ~ 4274967 (+) False coro7
TU24797 other upstream 1915 3947623 ~ 3985611 (+) True G16667
TU24749 other upstream 174223 3809208 ~ 3813303 (+) False LOC122332297
XR_006250493.1 other upstream 462125 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 664472 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 703870 3282990 ~ 3283656 (+) True G16530
TU25218 other downstream 365479 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 445735 4437288 ~ 4438201 (+) True G16955
TU25288 other downstream 467145 4458698 ~ 4459135 (+) False G16979
TU25277 other downstream 479179 4470732 ~ 4533298 (+) True G16978
TU25283 other downstream 479179 4470732 ~ 4486464 (+) False G16978

Expression Profile