RNA id: XR_006250479.1


Basic Information

Item Value
RNA id XR_006250479.1
length 3744
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC122341657
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19455426 ~ 19459635 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taACCCACAATGAGGTAGTCCAGCAAGAAGGATAGCAATACACATAATGACATTGCATTGACAAAGTAGACCGGATGAAGAAACACTGAACTGAAAGGAACTTACGGGGAAAGGAGATAATGGGGCTAATTAAtgacacacacctgaaccatACGACACGATCATGACAGAAACCAGGGCAACATTTTTAGAATTACACTAACAGGTCTTAAAAGATTAgttaactaaaaatgaaaattctgtcattaattactcactctcatctCATTCCTCAGCTATAAGacctttattcatcttcagaacacaaactaggatattttgatgaaatctgagagctctttgACACTACATAGACAAGTCAGCaacaactgaaatgtttcctCTTTGATCTCGTCAAAAAATATCTTGTGAGAATGACgagggtaagtaattaatagcggatttttaatttatgggCGAACTAATCCTATAAACTTGCTATCAGACAAGCATGTCATCAGAGATTTAGCAAAGTTTTAGAAACcttgttttaatgatttagaatACTATTCTGTGTGcacgtttttaatttatttcaagatAAAGTTTATTCCTACGCTGGTCTTTAAGGTGGTTTTAAGCATTTCCAACTAAGACGTATTTTGgcatacacatacagtaataTGTTTGCAGGGACAGCAGCTCTCACAGAATCTTCTGTGTTAGCAAACCAGGTGTCCCTAGGGTTCATAATCTTAATCTGTGGCCAACATTTGATCTTATTTTGGGCTTGTCCTGAGTTAGACTTCGGGTGCTCATCACGTTCGTGGCCTTAGATAGTTGCAGAGCGGCAGTGTACCCTGATCCTGTGACATGCAAGGACAGATGCTCTGAGTGCATGTCTCGCTCTGCTTTGAGCACACACTCCCTTTCCTGACCTTGCATGATACAGCACACAAACCTTGACTGGTATTGGATTTCTCAATGGCATGGAGTATAGAACGGCAGTGCAGATACTGTAGGTTTTACCGCAAAAGGATTATTAAAGAGTGCatcataaaattgttatatttgcaCCCAGAACAGTGGCTATTAGAACTAAGTGTAAATAGGGATAGAGGTtatttacactatatatatactatatacactaAATGAAAATAGGATATTTTCTTAGTGACAGATGCTATTTACACAGTGCAAATAGCTATTCTATTTACACTgtcaaaataacagaattttctgCTATgtatactacttattgcaatATTGGATAACTActttgtaaattttatttttcatttaaattattaaatgggtGCCACCTTTTTGGCACTataaagccctccctacacctaccctTACCTTACcgatactttattttcaactttttggaTTATTTCCTTCATTCTTGTTGAAAAATAAGAAGCTTTTTCTGGTGTGATATCAAATTTGGAAaggttgaaataaaaaagtttgaacCCGGGGTCGATTGCATCAAAAGGCGTACGCCACCTGCTTTCTCATCTGCACCACTAAAGCCGATGACTAACGCTTGTCTTTTCTAGTGTTGACTAGCCACACAATTGGAGGGTGGAGTTAGAGCaaatagcctctgccaacaaGGCAAGCTATTTAGTGTGCAAAAAGGCGGCAAAGGTCTATCGTCTAACAGAAGAGGAGTCCGGCTAGTTTCATTAACTTGGCTATGTCATAATATATGTGCTCTGCTCATGTTGCAGCACTGACCTGCTGTGACTCTTTTGAAATCCTAGTAAACCCAGGCTGGCATCGCTGCTGACATCTCAGTGACTAGTGAGATCTCCTCTGACTCAGCGGCCATCGTTTACCTGTCAACAACACCTCCAAAGGTTTTATAACCAAGCTACAGCATTTTATTATCCCCTGAATGAGTCCAATAGGACTTAAGATGACATAACTTAATTTCTTAAATGAAGaacacataattaaaataatctcGTAATTCTGTAGTGTACGTAGAAACGTAACgttaccttttcaaaaggtacacgtTTATCCTAGGTGCTAATGTGTATGATATTTGTtgcttgtaaacaaaaaaaaagtcacgaGCAGAATCAGACATTTAGACAGAAGAACCACCTGAAATAAAACTGCCGCTCGCTGATAGCTGATTGTAAAACTCATTTAACATTATGTTTATGAATACATGCAAATCTAATATTTGACCTGCAATCAGTTTGGTAGGTAAGAgttgtaaaataaaagagaacATCCAGCATTGTTTATCTGTACGATACTTCGTGGGGTTTTTTCCCTGGTGTTTCCATCGACACCTGAGATGGGGAAAAATCGTGGATCCTGTCTCCAAagcctgatttatttattcattatgcCCTATCACACTGCCATCTAGTGCGCATGCCTTTAATAACAGCTTGCTCTTGAACGCAATACCAACTATCACCAATTAATTactctttaacacacacacacacacacacacaagtatgtttttgtgaaaagtggGGATGTTCCATAGGCTCAAATTGTTTTTATGCTGTACAAACGATACACACTATACACCTACCCACacctcttacaggaaactttgtGCCATTTCAGATCGTCAAAACACTACATTCTGGTGAGATTTATAAGCCTTTCATAAATGGGGACATGGGGTAAAGTCCTGAAAAGACACCTTCTCCTTGTAATACCCGTCATAATACAAATTtatcacaaaaataactttaatttaaaaatctgtcacaaaagcgcacacacacacacacacacacacacacacacagacacacctgtGAATTGTGCAGACTTTCTGTAGCTTTCTATTACTTTTACACTGactaataaacaatattttctatccCCTAACCCAACCCcttacagtacacacacacacacacacacactagttcAATGGTCATCACTGTTAAGCATGgactgaacaaaaaaagaagatgtAATTTCTataatgagttttatttttaaccagatcattttaagtaaatatcagACAGTGAACTTCGTCATCTGTTCTTCATACAGCTGGACTGGCAGATGGACTGTAAACATTGTGAACTGTATGGCACACTGCACATTTACAAATAACATTGGTGGCCAAAATACTAACGTATTAGTTGATAAAAATAgcaactttcttttttctgcaaatTAGTTGATTTGACATTTAAGACTATTAAGactcacacacaacacaaaacacacacaaagctatTGCTTGCCGTTACGAGCAGCGTATTACTGCACTGTTAATTAAAGATGTCACTACTGACAAAGACAActcaaaataacattcaaaaatcACAGCCTAACTATCAGGGCAGATCAGAATGACAGTGACATTCTTTAAGTGCTTCTTCAAAAGTTCAGTTTATAGCCACGGCTACTTTTCCAGCAACCAGGCGATTTAGTTTCTAATCTAATTTCCCTTTTGCAGGCACACTGACATGACAAGCTGATTTACGTGTTTTCGATACACATGAGATGTTTACTACAGAAATATGGAATGTGTTAGGAGGTTTTCACAGTTTTCAAATAACTTTGCAACACAATCAATACAGGCATTTAGGTTATTGACAGGTTACAATTACAGTTTATAGCAGAAGAGTAAACCCTCACTTTTACACAAGATCACAGACATTAaacagggagagagaaaaaaagaaaagtaacacGCAAACAACCACGTTTGGAGGagtgcatacacacacaaacacacacacacacacacacaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31570 lncRNA upstream 14780 19438007 ~ 19440646 (+) True G21239
TU31539 lncRNA upstream 150368 19304852 ~ 19305058 (+) True G21215
TU31441 lncRNA upstream 167777 19258917 ~ 19287649 (+) True G21151
TU31498 lncRNA upstream 600883 18854109 ~ 18854543 (+) True G21188
TU31495 lncRNA upstream 626173 18828686 ~ 18829253 (+) False LOC122341799
TU31624 lncRNA downstream 11364 19470999 ~ 19472687 (+) True G21269
TU31590 lncRNA downstream 23866 19483501 ~ 19484384 (+) True G21246
TU31630 lncRNA downstream 30138 19489773 ~ 19490022 (+) True G21275
TU31631 lncRNA downstream 30494 19490129 ~ 19490595 (+) True G21276
TU31632 lncRNA downstream 31520 19491155 ~ 19491623 (+) True G21277
XM_043235343.1 mRNA upstream 1111 19451411 ~ 19454315 (+) True si:ch73-141c7.1
XM_043235344.1 mRNA upstream 5764 19447171 ~ 19449662 (+) True hsd17b1
XM_043235342.1 mRNA upstream 9529 19443220 ~ 19445897 (+) True LOC122341749
XM_043235801.1 mRNA upstream 37535 19409591 ~ 19417891 (+) True rabep2
XM_043235803.1 mRNA upstream 46742 19403562 ~ 19408684 (+) True si:ch211-11k18.4
XM_043229689.1 mRNA downstream 49453 19509088 ~ 19511507 (+) True nkiras2
XM_043233601.1 mRNA downstream 458035 19917670 ~ 19921271 (+) False aspdh
XM_043233600.1 mRNA downstream 458571 19918206 ~ 19921271 (+) False aspdh
XM_043233599.1 mRNA downstream 458574 19918209 ~ 19921271 (+) True aspdh
XM_043233554.1 mRNA downstream 471098 19930733 ~ 19941580 (+) True pold1
TU31603 other upstream 52250 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 52250 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 52250 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 163085 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 462229 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 604855 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 606495 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 647211 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 725932 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 727893 20187528 ~ 20188083 (+) False eftud2

Expression Profile