RNA id: XR_006250511.1


Basic Information

Item Value
RNA id XR_006250511.1
length 1883
lncRNA type inter_gene
GC content 0.42
exon number 7
gene id LOC122342058
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24100850 ~ 24107752 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAAGAAGACATTTCCCGAAAACAATGTGCTCATGagaagttattaaaataacGGAGATTGAATCATATAAAGGAGTTACTGGCTAAAACAACGAACATGTCGATGAAGGCGATTTAATCCTGGAGAAATCCTCCTTCAAGAAACAGGGGAGGAACTTCAGCGAGAAGAGAGAAGAATAGGCTTCCGGACAGACCGAGACAGATTGAGATGAATTTATTGGAGCAGCAGACAAGAGCTCAGAAAAGACTCGAGTCAGCCTGATGATTGAATATTTCGAacaaatgcCCCCGGTTTGACCCTTTGACCCCTGACTGCAGTCAAGCACACAGTCCAGTCTGGAGATAGAGACGGACAGGCGACTGATGGAGGCTTCTTGGTCAAACATTACTATCATGTCAGATCATGTGTGGCAAACGAAGATGTTGAACCGGGAAGACGTCAAACTCTCTGAAATCAGGATCTTCCTGCggcctcctcctcatcctcctgctcctcctcctcctcctcctcctcctcatccgaTGCCCCTTGGCTCGGGGACCGGTCTGCAGTGGAGTCTTTTTgttgtctggtccctggatgatATGACGGTGCAGAGAATGTGTGTTGAGCCGAAGCTGCTGTTTTTGGGCGTCTGTGGAGGTGTCTGAGGAGAATCTGGAGACTTCTGCGCTGCTGTGAGTCTGACCTAAAACTTTCAGTTGAAGAAACATCACCAGCTCTGTCCGTCCATGAAGATCAAGTGGTGTCCTGCTCTGAGATGATCGTTTTGGATGAACTGATGACAAGTGAACGTTTCTGAGTTCCCAGACCTACATTTCAAGCCTCTTTTAAAGTCTTCCCCTTCAAATCATCGGCTGCTTTACTGACAGGGAAACCAAGTTTTTACTGCCGAGGTACTCACTAAACCTGCTCAGGAGGCCACGCTAAACTAAAGTTTTCACTTCAAACATCTTTATACACTTTGACCGAACTGGACAAAAACTGTAGTCTTTTGGTTCATCTTAGATGTTCAGAAGAGTTTTGTAAAGCTCAGCTGGTGAAGCTCATTAGAGCATCACTTCCTTGTCTCATTTTAGACGGGTACTACTGATAATCAGTTTACACACACATGTGATGCAgttacacactctctcactaATTCCTGTCCAGGTTAATGATGTGGACTAGAACTTAGAATGGATTGTACCACTGCTATGACATTATTATACTCTTACATTACAAAGGGTTTTAGTTACGTTTGGGGGAAATAGATGTTACACGGTAGTCATgaagaacaacaacaataaagtGTCCCAGAGGGATGTCATTCGGGGCATGAACGTGATTGTTTACATCCTGagaatttaaaatgctattaataGTATGTGGAGATACaataagaaacattattatttagattatagTGTTCTGTTTTACTCTGAATCTCTACAACCTCAGCCCAGTTTGGATACGGATAGATGAAGTtgagttcatttaaatacagtgtTCATGGTGATAATAAAACAACCGTTTAGGAGCCCTTTCTGCTAACATGCAGATCCGTATTAAAAAGCTGTGCACTGGGATTTAAGAGAAATCTCTAAAGACCGAGGCCTGCATTCACAAAACACTTTCTTACCACTAAGAGATCTCTTAAATAGTTTTTAGCTAAGTTTACTTTTCAAAAACAGCTGAGACCATCTTTTACTGAGAAATAGAGAGAAGTCTTGACCTGAAGTGACCTCGTCGCCGTGGATGATGTCAGCAGGCTCACTAACTTTGCACACAGTGATCGGCTGATAGTCTCTGTCGGAGATTTATTCATAGAAATATTGTAGAGAGCGCTATTATGGTCccatgttcaaataaaaatgctaatagcCACATTCAAAAAGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34073 lncRNA upstream 6255 24091320 ~ 24094595 (+) True G22957
XR_006250515.1 lncRNA upstream 17366 24081517 ~ 24083484 (+) True LOC122342062
TU34072 lncRNA upstream 17867 24081566 ~ 24082983 (+) False G22957
TU34062 lncRNA upstream 17974 24081566 ~ 24082876 (+) False G22957
TU34068 lncRNA upstream 17974 24081566 ~ 24082876 (+) False G22957
TU34095 lncRNA downstream 9168 24116920 ~ 24120278 (+) True G22963
XR_006250521.1 lncRNA downstream 14456 24122208 ~ 24123879 (+) True LOC122342068
TU34098 lncRNA downstream 15435 24123187 ~ 24123857 (+) False LOC122342068
TU34101 lncRNA downstream 25974 24133726 ~ 24516998 (+) True G22968
XR_006250519.1 lncRNA downstream 89106 24196858 ~ 24198029 (+) True LOC122342066
XM_043235833.1 mRNA upstream 6240 24083986 ~ 24094610 (+) True tom1
XM_043235837.1 mRNA upstream 29006 24058693 ~ 24071844 (+) True zgc:171844
XM_043235831.1 mRNA upstream 44459 24051922 ~ 24056391 (+) True LOC122342045
XM_043235839.1 mRNA upstream 48937 24039902 ~ 24051913 (+) True LOC122342055
XM_043234023.1 mRNA upstream 223176 23873131 ~ 23877674 (+) True mchr1b
XM_043235834.1 mRNA downstream 30791 24138543 ~ 24142121 (+) True LOC122342047
XM_043235828.1 mRNA downstream 35064 24142816 ~ 24148359 (+) True LOC122342038
XM_043235829.1 mRNA downstream 48604 24156356 ~ 24162242 (+) True LOC122342039
XM_043234709.1 mRNA downstream 261461 24369213 ~ 24374564 (+) True LOC122341365
XM_043228408.1 mRNA downstream 413276 24521028 ~ 24524600 (+) True gcat
TU34076 other upstream 3691 24095024 ~ 24097159 (+) True G22958
TU34051 other upstream 48987 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 48987 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 264670 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 692036 23403441 ~ 23408814 (+) True LOC122341907
TU34141 other downstream 326303 24434055 ~ 24439463 (+) True G22996
TU34053 other downstream 339126 24446878 ~ 24449289 (+) True G22953
TU34113 other downstream 421789 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 613774 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 613774 24721526 ~ 24811577 (+) False G23026

Expression Profile