RNA id: XR_006250518.1


Basic Information

Item Value
RNA id XR_006250518.1
length 260
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id LOC122342065
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24212347 ~ 24214974 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACCGGTCTGCAGTGGAGTCTTTTTgttgtctggtccctggatgatATGACGGTGCAGAGAATGTGTGTTGAGCCGAAGcTGCTGTTTTTGGGCGCCTCTGTGGAGGTGTCTGAGGAGAATCTGGAGACTTCTGCGCTGCTGTGAGTCTGACCTAAAACTTTCAGTTGAAGAAACATCACCAGCTCTGTCCGTCCATGAAGATCAAGTGGTGTCCTGCTCTGAGATGATCGTTTTGGATGAACTGATGACAAGTGAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34086 lncRNA upstream 1787 24100860 ~ 24210560 (+) False G22959
TU34078 lncRNA upstream 1787 24209568 ~ 24210560 (+) False G22959
XR_006250514.1 lncRNA upstream 1885 24209574 ~ 24210462 (+) True LOC122342061
XR_006250522.1 lncRNA upstream 6612 24198227 ~ 24205735 (+) True LOC122342069
TU34123 lncRNA upstream 9339 24201105 ~ 24203008 (+) True LOC122342064
TU34125 lncRNA downstream 18792 24233766 ~ 24236075 (+) True G22982
TU34132 lncRNA downstream 53452 24268426 ~ 24449870 (+) True G22988
TU34134 lncRNA downstream 123897 24338871 ~ 24339654 (+) True G22990
TU34142 lncRNA downstream 219081 24434055 ~ 24437016 (+) False G22996
TU34149 lncRNA downstream 342737 24557711 ~ 24558261 (+) True G23002
XM_043235829.1 mRNA upstream 50105 24156356 ~ 24162242 (+) True LOC122342039
XM_043235828.1 mRNA upstream 63988 24142816 ~ 24148359 (+) True LOC122342038
XM_043235834.1 mRNA upstream 70226 24138543 ~ 24142121 (+) True LOC122342047
XM_043235833.1 mRNA upstream 117737 24083986 ~ 24094610 (+) True tom1
XM_043235837.1 mRNA upstream 140503 24058693 ~ 24071844 (+) True zgc:171844
XM_043234709.1 mRNA downstream 154239 24369213 ~ 24374564 (+) True LOC122341365
XM_043228408.1 mRNA downstream 306054 24521028 ~ 24524600 (+) True gcat
XM_043234711.1 mRNA downstream 310306 24525280 ~ 24530769 (+) True mcm5
XM_043228301.1 mRNA downstream 324349 24539323 ~ 24545214 (+) True foxred2
XM_043235412.1 mRNA downstream 330437 24545411 ~ 24549093 (+) True ankrd54
TU34076 other upstream 115188 24095024 ~ 24097159 (+) True G22958
TU34051 other upstream 160484 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 160484 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 376167 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 803533 23403441 ~ 23408814 (+) True LOC122341907
TU34141 other downstream 219081 24434055 ~ 24439463 (+) True G22996
TU34053 other downstream 231904 24446878 ~ 24449289 (+) True G22953
TU34113 other downstream 314567 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 506552 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 506552 24721526 ~ 24811577 (+) False G23026