RNA id: XR_006250543.1


Basic Information

Item Value
RNA id XR_006250543.1
length 90
RNA type snoRNA
GC content 0.47
exon number 1
gene id LOC122342197
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11162354 ~ 11162443 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCTTCTTTGATGTTTTTGCACTGGGCTCTGAACTGGTCTGTAGACAATGTGCGGTTCTGCTCTTGACATGGCAGAATCTGAGAAGTGC

Function

GO:

id name namespace
GO:0000775 chromosome, centromeric region cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005874 microtubule cellular_component
GO:0098687 chromosomal region cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28177 lncRNA upstream 51929 11108748 ~ 11110425 (+) True G18903
TU28146 lncRNA upstream 65936 11021328 ~ 11096418 (+) True G18879
TU28166 lncRNA upstream 83622 11077044 ~ 11078732 (+) True G18894
XR_006248664.1 lncRNA upstream 143652 11012209 ~ 11018702 (+) True LOC122333718
TU28072 lncRNA upstream 191890 10932371 ~ 10970464 (+) True G18824
XR_006249214.1 lncRNA downstream 27113 11189556 ~ 11192995 (+) True LOC122336311
TU28206 lncRNA downstream 27496 11189939 ~ 11192392 (+) False LOC122336311
TU28212 lncRNA downstream 107759 11270202 ~ 11271106 (+) True G18932
TU28231 lncRNA downstream 108725 11271168 ~ 11370981 (+) False G18945
TU28247 lncRNA downstream 127304 11289747 ~ 11294605 (+) True G18960
XM_043231371.1 mRNA upstream 155720 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA upstream 155720 10978149 ~ 11006634 (+) False mybpc2a
XM_043231384.1 mRNA upstream 155720 10978149 ~ 11006634 (+) False mybpc2a
XM_043233932.1 mRNA upstream 207625 10948678 ~ 10954729 (+) True akt1s1
XM_043235139.1 mRNA upstream 276731 10874237 ~ 10885623 (+) True LOC122341641
XM_043235291.1 mRNA downstream 116294 11278737 ~ 11281741 (+) True cldni
XM_043235878.1 mRNA downstream 142882 11305325 ~ 11308557 (+) True prf1.9
XM_043235879.1 mRNA downstream 146239 11308682 ~ 11313369 (+) True prf1.1
XM_043228831.1 mRNA downstream 171298 11333741 ~ 11335780 (+) False LOC122331261
XM_043228836.1 mRNA downstream 171299 11333742 ~ 11335780 (+) False LOC122331261
TU28036 other upstream 380501 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 380501 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 1127887 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1362599 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1412474 9739796 ~ 9749880 (+) True G18491
TU28257 other downstream 171316 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 206450 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 610758 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 610758 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 610758 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile