RNA id: unassigned_transcript_275


Basic Information

Item Value
RNA id unassigned_transcript_275
length 73
RNA type tRNA
GC content 0.51
exon number 1
gene id trnar-ccu_2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1865713 ~ 1865785 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccccagtggcctaatggataaggcactggcctcctaagccagggattgtgggttcgagtcccatctggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23770 lncRNA upstream 484 1619907 ~ 1865229 (+) False G16002
TU23827 lncRNA upstream 10029 1854895 ~ 1855684 (+) True G16033
XR_006248080.1 lncRNA upstream 39396 1824790 ~ 1826317 (+) True LOC122330751
TU23825 lncRNA upstream 39665 1825084 ~ 1826048 (+) False LOC122330751
TU23788 lncRNA upstream 161037 1689042 ~ 1704676 (+) True G16008
TU23807 lncRNA downstream 5495 1871280 ~ 1873520 (+) True G16017
TU23808 lncRNA downstream 5495 1871280 ~ 1891027 (+) False G16017
XR_006248070.1 lncRNA downstream 76904 1942689 ~ 1943729 (+) True LOC122330717
TU24127 lncRNA downstream 158563 2024348 ~ 2320138 (+) False G16222
TU24151 lncRNA downstream 162609 2028394 ~ 2030843 (+) True G16233
XM_043230436.1 mRNA upstream 135716 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 138020 1711295 ~ 1727693 (+) True LOC122329718
XM_043227003.1 mRNA upstream 165050 1693056 ~ 1700663 (+) False LOC122330144
XM_043227012.1 mRNA upstream 165050 1694985 ~ 1700663 (+) False LOC122330144
XM_043226996.1 mRNA upstream 165050 1695222 ~ 1700663 (+) True LOC122330144
XM_043227073.1 mRNA downstream 1839 1867624 ~ 1870610 (+) True LOC122330213
XM_043230813.1 mRNA downstream 59962 1925747 ~ 1941793 (+) True LOC122333258
XM_043226579.1 mRNA downstream 136894 2002679 ~ 2010431 (+) True rangap1a
XM_043235918.1 mRNA downstream 265433 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 294561 2160346 ~ 2165693 (+) True LOC122333054
TU23769 other upstream 484 1619312 ~ 1865229 (+) True G16002
unassigned_transcript_274 other upstream 214985 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23776 other upstream 216219 1559387 ~ 1649494 (+) False G16003
TU23778 other upstream 216219 1616236 ~ 1649494 (+) True G16003
TU23773 other upstream 219181 1615708 ~ 1646532 (+) False G16003
TU24128 other downstream 190896 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 190896 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 192892 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 246252 2112037 ~ 2114339 (+) True G16223
TU24191 other downstream 295060 2160845 ~ 2165614 (+) False LOC122333054