RNA id: unassigned_transcript_278


Basic Information

Item Value
RNA id unassigned_transcript_278
length 4123
RNA type C_gene_segment
GC content 0.48
exon number 9
gene id LOC122331923
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12981087 ~ 12987204 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAAAATGTATTCGAATTGAAAGATAAAGCTTTagctaaaatatcaaaaataaaataatgaatcaagCAATTTTGaataatcataaattaaaaataaatatatatatttaatatataaagtctAAATATATAACTCTGCAGTAAAAATCTAATATCGTTAAACCATTAGCTGGCTTAATAATGGAAGtaaatgtttgtctgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgcatattttatgtcatttgtaCTGTTTGATATTATAATCACATGAACACATTATGCTCCCTATAACAGTTCAGTTATTAGAGTTTGCTAATTTATAGTCACATCAGTTGATCTACAGCATGCCAAGACGCCATTAGCTGACTTGTTTGAGGTTGTCAGGGTCACCTTTCTctgctaatattttatttcattaacaaGACGAAACATGACAGATGAAAAGTCCCAAATCTCAAAAACTGTATAATTCAATCATggttctttctctttcataaAATTGCAGCTGGTGTCCTTTTACTGGAAGGGCAGGCAAAAcgcttaaaatattgtaattataacaGAACATGTTGGTGCTGCACAGTGGAGTCATTCAAATGTGTTCTTGTCTGTTCCTGCAGAATGTATTGTGTGGGTTGAGAATCCTCTGAATGACACCACTGAAACAGATGATAGAGACATTGCAAACACCGCTGTAACCTTTGTTTTCCTGTTCCTCATCACCTTGTTCTACAGCATAGGGGCTACTATTGTTaagGTGAAATGATAGATTCCTTCAAGGACATGCAAGATTTCTCAGAAAAACAgctctattatttttttttcattactgtaaatatgtgattgtgatgtttgtttgtttttaaattttgctttaataaaagaaagaaatcatttgattgctcttgtatttttttctagtttaCAAAGCTTTGATTTGCACGATCACCTCTAACGCTGCTCTGAAGATGTTTATGTAAACTACATAAGGAgtagcatttattaacacagaGAAGTATTTAAAAGCCCTTTTGAAATATAATCTGGATGTAATAATTTCTTAAATCCAAAGGTTTtggttttttctctctctcttttttaagcTGAAGCGCAGCTCTTCTAGATGTGGATATTTATGAGTCTAAATATTTCATGCTGCAAAGTATATTAAAACTTGAATTGCATAACAAGCAAGTCGTTTTATGTAAATGGCAAGGTGTCTTTCCTGTGCAGATGTGCTCAGCCATGTCTCAGAGATGCAGATGGTTTTCAGTTCTGCTTTTGGTGGCTATTTCAGCTTGACTGTTACTTAACATTTCCATCTGCTATTTGCTATGTTCATTGAAGCATGATTCTGATTTCCTCTTCTGTCCATCTTTGTTTTCAGTAtctgcaacatttaaaaattcccaaaatgtaaataaccgCCACACTAAAACATCAGCAGCATTCATTTTCATCAAGCATTTTCATATAATGTGTACATTTCTTTATACCAAACTGCCTAAGTTAATTGATGTTGTCtattttttaatagcaaaaCGTATCACAAGGCCTACTATTGCTGTGCTGAGTAGTGAGGACGCTAACGGGATTACGTTGGAGTGCCAGTTGAATGATTATTTCCCAGAAAAAATTAGTGTACAATGGCTTGAGGGTGAAACGTTTGCCGGGAATCAAATTGATAAAATTCTTCAGAGCACAGAATCAAATGAGAAAAACTACACTTACATAAGTCAGCTATTTATCCCAGCTATTTATccatatcaaaacaaaaactatgctTGTAAAGCCACCCACAATTCTGAAGTGTTCAAGAAAGAATACAACACATGCAAAGCACAATCTTTCTCCAAACCTTCAGTCCGAATAGAGAAAGTCAATCTCAGAGACATTACACCGGAGAATGGGATCACAATTCGCTGTGATGTTGAAGCACCAGACAACACTGAAGTGTCATGGTTAACAGATGGCATAAGTAAAAGAGCCACCAAAGATATCAAAGACCTGCCCAATAACATTAACAGCTACTTGACTTTGTCCAGAAATGATTGGTTGAACCTTACGACTATTGTTTGTGTCGCCAAACATCCATGTTTTGAAGCAAAGGATGAAATTCACAAAAATAATACAAAGACAGATCCTGTAGTGGTGATCAGGAGGTCTCTTGTGAATTCAACGCAGACAGACAGTGCTGTGCTGGAGTGTGTTGTAAATGGTCTCCCTTCTGGTGAAGTCTGCATCAACTTCCAGGCCAATCATTTGGATATCTCAGATTTAATTTGTGTGGATTGGGCCTCGTCTGAGAACATCTGGTCCTTGAccacacattttacaatacCTAAAGAACAccagaaaaatggaaaaacctTTACCTGTACAGTTCATTTGCTCTTCGAATCCTGGACATCGAAACCTACAGGAAATATTTTTGGCGATCCTACCATAGAGCTTGCTGTTGTTTCCAGTGTGGGTCAGTCTAGTCCAGACACACAGAAGCTGCTGTGTTCTGCGACAGGATTCAACCCAAAAATCAAGTGGTTTTCACAGTCTAGTGAGAGATCTGCCAGCGCTTTAGAGCCCAAAATAATGGATGATGGTCTTGTGAAAGCATACAGTGAGATACTGCTGACACAGAAAGAGTGGAATCGAGGGTTCACTTACACCTGTCAGACTGATAACGGACACAGCGGGAACACTATTGAGAAAAGTACCAGTATCTGCACAGTAATCGCACCATCCAGTCAGCAGGCAAAGGTCTACCTGGTGGGTCCATCTCTAAGTAGTGTGAGATCTGACACCTCTGTGAATGTGACATGTTTGATTGTTGGTCAGAGAGTCAATTTATTCTCCATTCAATGGAAAGTGAATGGTATCGTTTCCAGTCCAAATGGCCTTGAACAAAAGCCTAGAGTTCATGACAATGGGACTCAAAGCAAAGGAAGTACGTTGAAGGTTTTAGTTACAGACTGGGATTCGTACGCTCTCTTTACCTGTGAGGTTAAGCATCTTTGCTCAAATGATACACAGCAGAAGAGCATCTCAAAAACCCGAGACCCAAAACAACCCTCTGTGAAAATCTTCAGACCCTCAGACAGTGATCTCTCTGGGCTCCAAAATGCCAGTCTAGTTTGTTTGATCACTGGTTTCTTCCCATCTGATATCACCGTGCAGTGGCAActaaatgagacacagctgGATGCATCTCAGTTCATTAACAGTCCTGTGGCTGCTCACACTTCAGGAGGTTTTACGATGCATAGTGCCCTAATGCTGCCTGCATCAGAGTGGAAAGATGGCACATTCTCATGTGTTGTTTCTCATGAATCATCCCAATATCCATTCAAGGCCACTATAGAGAACGTGTATGcctcgTTGACTCACTCTCCTCCGTCTGTAAAGCTGCTGCAGGGTACTAGTGTGCCTGAGCTAGTGTGCTTGGTATTTGGTTTCAGCCCACCTGACATCAACATCACCTGGTGGCTAGGTGAAACTAAGATGTCTGCCGACAGCATCACAAACCCTGCAAAAGGCCCTAATGGAAAATTTAGTATCCAAAGTCGCCTGGATCTCCAACCTTCAGACTTGACACCTGGTGGGGTGTACACTTGCAAGGTCTCTCACGTTACTGGTATCTTCAACGAGAACGTCTCAACGAGAACAAcattgttTGAAGAGGCTATATTTATGAATGAGAACAAGCCTGAAACCTTTAAACAGGATACAGTGGAAGAGACTTGGAATATGGCCTGTGTtttcctcatcctcttcctcctctcttttTGCTATGGGTGCACAGTGACTTTGGTTAAAATCAAGCCTACATGAacaatattgtgtgtgtgtgtgtgtgttatgcctACTAGATTGctatgcttttttgttgttattattttgtttatcttaTATGTTGTCTTATAACTGACTTAGCTTTGCAAAAATTAAGTGGTAAATTCAGCGTTTGGcctatgaatatgaataaataagtggttttaatacacacacttttaattatatattagcaGTACATCACAGATTTGTCCTTTTTTCAGATTATCAGTGAATGTTATCTCaaattatgtattgtttttgaataaaagatCCAAATCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29260 lncRNA downstream 78177 12900781 ~ 12902910 (-) True G19672
TU29337 lncRNA downstream 94133 12864310 ~ 12886954 (-) False G19677
TU29341 lncRNA downstream 94880 12864310 ~ 12886207 (-) False G19677
TU29346 lncRNA downstream 115925 12864310 ~ 12865162 (-) True G19677
TU29186 lncRNA downstream 289755 12689620 ~ 12691332 (-) False cacna1aa
XR_006248461.1 lncRNA upstream 85356 13072560 ~ 13072828 (-) True LOC122332187
TU29374 lncRNA upstream 103467 13090671 ~ 13091152 (-) True G19703
TU29406 lncRNA upstream 138317 13125521 ~ 13129608 (-) True G19726
TU29519 lncRNA upstream 370375 13357579 ~ 13357789 (-) True G19811
TU29594 lncRNA upstream 646355 13633559 ~ 13633785 (-) True G19872
XM_043229414.1 mRNA downstream 994 12974708 ~ 12980093 (-) True LOC122332086
XM_043228204.1 mRNA downstream 217997 12681990 ~ 12763090 (-) True cacna1aa
XM_043225878.1 mRNA downstream 319239 12571028 ~ 12661848 (-) False LOC122329559
XM_043225869.1 mRNA downstream 319344 12571028 ~ 12661743 (-) False LOC122329559
XM_043225865.1 mRNA downstream 324253 12571028 ~ 12656834 (-) False LOC122329559
XM_043229457.1 mRNA upstream 96005 13083209 ~ 13083734 (-) True LOC122332149
XM_043234627.1 mRNA upstream 120627 13107831 ~ 13111379 (-) True LOC122341259
XM_043234774.1 mRNA upstream 143732 13130936 ~ 13134638 (-) False yipf2
XM_043234773.1 mRNA upstream 143732 13130936 ~ 13134638 (-) True yipf2
XM_043234946.1 mRNA upstream 186147 13173351 ~ 13227138 (-) True tnrc6c1
TU29176 other downstream 301287 12622783 ~ 12679800 (-) True G19606
XR_006250490.1 other downstream 1060320 11913002 ~ 11920767 (-) False LOC122341756
TU28873 other downstream 1118124 11853748 ~ 11862963 (-) True G19383
TU28829 other downstream 1253112 11715722 ~ 11727975 (-) False limd2
unassigned_transcript_279 other upstream 146 12987350 ~ 12992329 (-) True LOC122331939
TU29331 other upstream 18792 13005996 ~ 13068190 (-) True G19676
TU29371 other upstream 59837 13047041 ~ 13047494 (-) True G19700
unassigned_transcript_280 other upstream 63082 13050286 ~ 13050861 (-) True LOC122332129
unassigned_transcript_281 other upstream 92866 13080070 ~ 13080621 (-) True LOC122332138

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051679 True 5297 mRNA 0.40 16 NC_007114.7 33949246 ~ 33961589 (-)
grasscarp (Ctenopharyngodon idella) TU313201 True 127 TUCP 0.35 1 CI01000069 4942073 ~ 4942199 (-)
rainbow trout (Oncorhynchus mykiss) TU313201 True 310 lncRNA 0.35 2 NC_048567.1 56476368 ~ 56477171 (+)