RNA id: unassigned_transcript_281


Basic Information

Item Value
RNA id unassigned_transcript_281
length 439
RNA type V_gene_segment
GC content 0.51
exon number 2
gene id LOC122332138
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13080070 ~ 13080621 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCAAACCATGAACTCCTTGTCTCTCtggttgttgttgctgctggcaGCTGTTCCTCGTGTCCACTGTGTTGAACTGACCCAGACTGATTCTCTTGTCTTAAGTCCTGGTCAGGTTTTGACTCTATCCTGTACAATCTCTGGATATTCAGTGACTGACAGAAACTACTGCAGTGGTTTCATTCGGCAGCCTGCAGGAAAAGCTCTTGAATGGGTTGGAGAGATATGTGGTAGCGGTAACACATATTACAGTGATAAACTGAAAAGTAGATTTCAAGTTACCAGAGACTCTTCCAGAAACACAGTGACTCTTCAAGGACAGAAAATGCAGACTGAGGACACAGCTGTGTATTACTGTGCCAGAGAGTCACAGTGACACAGAGCAGATACTCTCTTGATCAAAAACCAGATTACCACTCAGCACACAATACACAGCTTTG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248461.1 lncRNA downstream 7242 13072560 ~ 13072828 (-) True LOC122332187
TU29260 lncRNA downstream 177160 12900781 ~ 12902910 (-) True G19672
TU29337 lncRNA downstream 193116 12864310 ~ 12886954 (-) False G19677
TU29341 lncRNA downstream 193863 12864310 ~ 12886207 (-) False G19677
TU29346 lncRNA downstream 214908 12864310 ~ 12865162 (-) True G19677
TU29374 lncRNA upstream 10050 13090671 ~ 13091152 (-) True G19703
TU29406 lncRNA upstream 44900 13125521 ~ 13129608 (-) True G19726
TU29519 lncRNA upstream 276958 13357579 ~ 13357789 (-) True G19811
TU29594 lncRNA upstream 552938 13633559 ~ 13633785 (-) True G19872
TU29639 lncRNA upstream 705388 13786009 ~ 13792602 (-) True gng13b
XM_043229414.1 mRNA downstream 99977 12974708 ~ 12980093 (-) True LOC122332086
XM_043228204.1 mRNA downstream 316980 12681990 ~ 12763090 (-) True cacna1aa
XM_043225869.1 mRNA downstream 418327 12571028 ~ 12661743 (-) False LOC122329559
XM_043229457.1 mRNA upstream 2588 13083209 ~ 13083734 (-) True LOC122332149
XM_043234627.1 mRNA upstream 27210 13107831 ~ 13111379 (-) True LOC122341259
XM_043234774.1 mRNA upstream 50315 13130936 ~ 13134638 (-) False yipf2
XM_043234773.1 mRNA upstream 50315 13130936 ~ 13134638 (-) True yipf2
XM_043234946.1 mRNA upstream 92730 13173351 ~ 13227138 (-) True tnrc6c1
TU29331 other downstream 11880 13005996 ~ 13068190 (-) True G19676
unassigned_transcript_280 other downstream 29209 13050286 ~ 13050861 (-) True LOC122332129
TU29371 other downstream 32576 13047041 ~ 13047494 (-) True G19700
unassigned_transcript_279 other downstream 87741 12987350 ~ 12992329 (-) True LOC122331939
unassigned_transcript_278 other downstream 92866 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_282 other upstream 3405 13084026 ~ 13084966 (-) True LOC122341303
unassigned_transcript_283 other upstream 5754 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_284 other upstream 11589 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_285 other upstream 16508 13097129 ~ 13100644 (-) True LOC122341774
TU29676 other upstream 724747 13805368 ~ 13805978 (-) True G19933

Expression Profile