RNA id: TCONS_00010008


Basic Information

Item Value
RNA id TCONS_00010008
length 122
RNA type rRNA
GC content 0.59
exon number 1
gene id XLOC_005187
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9345364 ~ 9345485 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agccacagccatatcaccctgcagcccaacaccggttacttactgaagctaagcagggctgagcctggatgggagactacatgggccagcagggggcactcaacctgcggcCTGTGtgaatc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000168880

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011102 lncRNA downstream 107570 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00011101 lncRNA downstream 116735 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00010000 lncRNA downstream 257798 8996035 ~ 9087566 (-) False XLOC_005182
TCONS_00010003 lncRNA downstream 260796 9063675 ~ 9084568 (-) True XLOC_005182
TCONS_00009995 lncRNA downstream 750000 8590929 ~ 8595364 (-) True XLOC_005179
TCONS_00010026 lncRNA upstream 715151 10060636 ~ 10063668 (-) True XLOC_005199
TCONS_00011103 lncRNA upstream 779175 10124660 ~ 10129902 (-) True XLOC_005200
TCONS_00010030 lncRNA upstream 869845 10215330 ~ 10220119 (-) True XLOC_005201
TCONS_00010040 lncRNA upstream 1088971 10434456 ~ 10441613 (-) True XLOC_005208
TCONS_00010042 lncRNA upstream 1120140 10465625 ~ 10470405 (-) True XLOC_005209
TCONS_00010007 mRNA downstream 50545 9257457 ~ 9294819 (-) True XLOC_005186
TCONS_00010004 mRNA downstream 212682 9096963 ~ 9132682 (-) False XLOC_005183
TCONS_00010006 mRNA downstream 222012 9120766 ~ 9123352 (-) True XLOC_005183
TCONS_00010001 mRNA downstream 257798 9049339 ~ 9087566 (-) False XLOC_005182
TCONS_00009999 mRNA downstream 260724 8968275 ~ 9084640 (-) False XLOC_005182
TCONS_00010010 mRNA upstream 14836 9360321 ~ 9438227 (-) True XLOC_005188
TCONS_00010011 mRNA upstream 104180 9449665 ~ 9468618 (-) False XLOC_005189
TCONS_00010012 mRNA upstream 104182 9449667 ~ 9468618 (-) True XLOC_005189
TCONS_00010013 mRNA upstream 137390 9482875 ~ 9498060 (-) True XLOC_005190
TCONS_00010014 mRNA upstream 164992 9510477 ~ 9516981 (-) False XLOC_005191
TCONS_00010005 other downstream 228186 9117052 ~ 9117178 (-) True XLOC_005184
TCONS_00010002 other downstream 294186 9049532 ~ 9051178 (-) False XLOC_005182
TCONS_00009996 other downstream 485057 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00009989 other downstream 901343 8443904 ~ 8444021 (-) True XLOC_005174
TCONS_00009977 other downstream 1842266 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00010009 other upstream 14831 9360316 ~ 9363873 (-) False XLOC_005188
TCONS_00010015 other upstream 165095 9510580 ~ 9516981 (-) False XLOC_005191
TCONS_00010016 other upstream 165386 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010021 other upstream 302743 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010022 other upstream 324442 9669927 ~ 9671137 (-) True XLOC_005196