RNA id: TCONS_00010013


Basic Information

Item Value
RNA id TCONS_00010013
length 1808
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_005190
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9482875 ~ 9498060 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTTTATTATGTATTCTAGAACCCGGATTGTAAATGTCAGCCGCTGTTTTACTTCCGTTTATTACAACCTAAAGTTGTTTGTCATTCTTTGCTCACTTTTCGACTCCACAATTGAGAATCGAGGGCAATGTTAGCTACTTAACTAAACTCGCGACTTCCAGTAGTGTGATATTTGGTTTTGACAGGATGTCTCGCTGCGTCGCGTTACAGACGCATCTGGCGTCCGTGATTGAGGCTCTAGTTCACGCCGCGATCGCTGAAATGTGCAAACTTACGGATGTGGAGGCTCTGTCGGGTCTCACAAGCGATGCTTCAAAAGATCAGCGTAAATACACAGAGACCGAGGCGAGAATGAAGACGGAAAAGGAGGAGAAAATGAAGCGGTTTGCATCTGTTATGGAAGTATTGGGCAATGAAGCTCTAGGGAAAATAATAAAGCTCGTGGATGAATCCAAATTACTGTTGAATCTGGAGTGCAAAACGTTTTCAGGCAAAAGGGCAAAGCGGCCAGGCTGCATCTTGAACATTCTGTCTGCTGGTGGACTGGaagaggAACATTCTTATGATGGAAGCGCAAGAAGCCTGGAAATGAAAACTGATCATGAGTCTGTTGCGGTCACAGAGGACCGTCCAGAATCACCAGTGGTTTTGGCAGTGACGATCAGAGATGAATTTGGAAAAGTTGATTTGAAGTCCATCACTGCTGGTCACTTAAGCAATACTTCAGAAGATGGAGTAGCATCTGTTTTGCCAGAAGACGGCAGTGAACTCCCACAAGAAGCTGTTGCTTTATTTGGAAAGAGATCCTTTATTTGTTGCGACTGTGGAAAGAGCTTCTCTTCTCATAGCAACCTCAAATCCCACCAGCGCATTCACACCGGAGAAAAGCCCTTCGGCTGTGGCCTCTGCGGCAAGGCTTTCGCTCACAAACAAAGTCTCTCCGATCACCAACGAGTCCACTCAGGAGAAAAGCCGTTTGTTTGTAAAATCTGCGACAAATCCTTTGGTAAAGCGGCGCATCTGAAAACCCACGAAATCATCCACACCGGCGAAAAACCTTTTGCCTGCAACGTCTGCGGAAAGAGATTCAACATCGCTCAAAATCTGTCCAGACACCAACTCACACACACCGGCGAAAAGGAGTTCAAATGTTCAGTGTGTCAGAAAAGCTTCACACGGGCCGTAACGCTCAAAACGCATCAGCTCATCCACACAGGACAGAAACCGTACTCCTGCGTGTCTTGCGGGAAGGCTTTCCGTCACGCGGTTAACCTGAGAAACCACGAGCGCATCCACACAGGCCTGCGACCGTTCAGTTGTGACTTGTGCGGCAAGACTTTCCGCCAGGCTGTCAATCTGAAAATCCACAAACGAATTCACACGGGGGAaaagcctttcagctgtaagGAGTGCGGGAAGAGCTTCAGTCAGCAGAGCAGTCTCATTACACACAGCCGCACTCACTCCGGAGAAAAACCCTTTGGCTGCAATTACTGCGATAAGTGGTTTAACAATTCAAACAGCCTGAAGCTGCACCAGAGAGTGCACACCGGCGAGAAACCTTACTACTGTGAGCAATGCGACAAGTATTTCAGTCAGGGAAGTCACCTGCGTACTCACAAACGCCACATTCATGGAGGAGGGAAGCAGTACATATGCGATAAATGTGGGAAGAGGTATGCGGATCCTCGAAACCTTAAACTGCATAAATGCTTTTATGCTTAATCATGGTGTGGAGGACATTCGTCACTGTAGTAGAATTCTGAGCACATTTCTTTCTGTGAAATAAACCATATGGTGGATGAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-299 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDART00000160622

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011102 lncRNA downstream 245081 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00011101 lncRNA downstream 254246 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00010000 lncRNA downstream 395309 8996035 ~ 9087566 (-) False XLOC_005182
TCONS_00010003 lncRNA downstream 398307 9063675 ~ 9084568 (-) True XLOC_005182
TCONS_00009995 lncRNA downstream 887511 8590929 ~ 8595364 (-) True XLOC_005179
TCONS_00010026 lncRNA upstream 562576 10060636 ~ 10063668 (-) True XLOC_005199
TCONS_00011103 lncRNA upstream 626600 10124660 ~ 10129902 (-) True XLOC_005200
TCONS_00010030 lncRNA upstream 717270 10215330 ~ 10220119 (-) True XLOC_005201
TCONS_00010040 lncRNA upstream 936396 10434456 ~ 10441613 (-) True XLOC_005208
TCONS_00010042 lncRNA upstream 967565 10465625 ~ 10470405 (-) True XLOC_005209
TCONS_00010011 mRNA downstream 14257 9449665 ~ 9468618 (-) False XLOC_005189
TCONS_00010012 mRNA downstream 14257 9449667 ~ 9468618 (-) True XLOC_005189
TCONS_00010010 mRNA downstream 44648 9360321 ~ 9438227 (-) True XLOC_005188
TCONS_00010007 mRNA downstream 188056 9257457 ~ 9294819 (-) True XLOC_005186
TCONS_00010004 mRNA downstream 350193 9096963 ~ 9132682 (-) False XLOC_005183
TCONS_00010014 mRNA upstream 12417 9510477 ~ 9516981 (-) False XLOC_005191
TCONS_00010017 mRNA upstream 21190 9519250 ~ 9533956 (-) False XLOC_005192
TCONS_00010018 mRNA upstream 21190 9519250 ~ 9538578 (-) True XLOC_005192
TCONS_00010019 mRNA upstream 99091 9597151 ~ 9617770 (-) True XLOC_005193
TCONS_00010020 mRNA upstream 121849 9619909 ~ 9700605 (-) True XLOC_005194
TCONS_00010009 other downstream 119002 9360316 ~ 9363873 (-) False XLOC_005188
TCONS_00010008 other downstream 137390 9345364 ~ 9345485 (-) True XLOC_005187
TCONS_00010005 other downstream 365697 9117052 ~ 9117178 (-) True XLOC_005184
TCONS_00010002 other downstream 431697 9049532 ~ 9051178 (-) False XLOC_005182
TCONS_00009996 other downstream 622568 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00010015 other upstream 12520 9510580 ~ 9516981 (-) False XLOC_005191
TCONS_00010016 other upstream 12811 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010021 other upstream 150168 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010022 other upstream 171867 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010060 other upstream 2837156 12335216 ~ 12335331 (-) True XLOC_005222

Expression Profile

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