RNA id: TCONS_00010016


Basic Information

Item Value
RNA id TCONS_00010016
length 474
RNA type nonsense_mediated_decay
GC content 0.47
exon number 2
gene id XLOC_005191
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9510477 ~ 9516981 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCAGTCAGAAGAAGTATGGTAGTCAAGATGGACGCtgagctgttgttgtttttggtttCTGAGAACAAGGAACTGTTTGATAAGAACCACAGCGAGTACAAAAACACGAAACGGAAAGAAGCGCTCTGGCAAGGAATAGCAGACAAAATGGGAGTCGACGGTGAGTTTTGTTTTGCTGCAGCTTGTTGTGTAGCGGTGCAGGCAGCGCGCTAAAACACCATCATCACCAAacgtttgtgcgtttgtttgtgtaGTGGAAGAGGTGAAAGCTAAATGGAAAAACCTCAGAGACACATACACCAGGAAAAAGCGACTGGAGCAGGACGGCAGTCGTAGTGGACGAGCTGCTAAGAAAAAGAAGCAATGGAAATATATGCGAGTGATGGACTTTCTCGACCCCGCCACAGAACACAGAAGTGGTATTCTGGACAGCAAAATCGAGGATGACGAGCCAGATGAAGACAGCGGGGCG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-71 Predicted to enable DNA binding activity. Predicted to be located in nucleus.

Ensembl:

ensembl_id ENSDART00000171457

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011102 lncRNA downstream 273077 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00011101 lncRNA downstream 282242 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00010000 lncRNA downstream 423305 8996035 ~ 9087566 (-) False XLOC_005182
TCONS_00010003 lncRNA downstream 426303 9063675 ~ 9084568 (-) True XLOC_005182
TCONS_00009995 lncRNA downstream 915507 8590929 ~ 8595364 (-) True XLOC_005179
TCONS_00010026 lncRNA upstream 543683 10060636 ~ 10063668 (-) True XLOC_005199
TCONS_00011103 lncRNA upstream 607707 10124660 ~ 10129902 (-) True XLOC_005200
TCONS_00010030 lncRNA upstream 698377 10215330 ~ 10220119 (-) True XLOC_005201
TCONS_00010040 lncRNA upstream 917503 10434456 ~ 10441613 (-) True XLOC_005208
TCONS_00010042 lncRNA upstream 948672 10465625 ~ 10470405 (-) True XLOC_005209
TCONS_00010013 mRNA downstream 12811 9482875 ~ 9498060 (-) True XLOC_005190
TCONS_00010011 mRNA downstream 42253 9449665 ~ 9468618 (-) False XLOC_005189
TCONS_00010012 mRNA downstream 42253 9449667 ~ 9468618 (-) True XLOC_005189
TCONS_00010010 mRNA downstream 72644 9360321 ~ 9438227 (-) True XLOC_005188
TCONS_00010007 mRNA downstream 216052 9257457 ~ 9294819 (-) True XLOC_005186
TCONS_00010017 mRNA upstream 2297 9519250 ~ 9533956 (-) False XLOC_005192
TCONS_00010018 mRNA upstream 2297 9519250 ~ 9538578 (-) True XLOC_005192
TCONS_00010019 mRNA upstream 80198 9597151 ~ 9617770 (-) True XLOC_005193
TCONS_00010020 mRNA upstream 102956 9619909 ~ 9700605 (-) True XLOC_005194
TCONS_00010023 mRNA upstream 264571 9781524 ~ 9790485 (-) False XLOC_005197
TCONS_00010009 other downstream 146998 9360316 ~ 9363873 (-) False XLOC_005188
TCONS_00010008 other downstream 165386 9345364 ~ 9345485 (-) True XLOC_005187
TCONS_00010005 other downstream 393693 9117052 ~ 9117178 (-) True XLOC_005184
TCONS_00010002 other downstream 459693 9049532 ~ 9051178 (-) False XLOC_005182
TCONS_00009996 other downstream 650564 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00010021 other upstream 131275 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010022 other upstream 152974 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010060 other upstream 2818263 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010077 other upstream 4086786 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010097 other upstream 6064367 15581320 ~ 15584532 (-) True XLOC_005249

Expression Profile

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