RNA id: TCONS_00011103


Basic Information

Item Value
RNA id TCONS_00011103
length 5037
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_005200
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10124660 ~ 10129902 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcacggtctcctctccaccaatcagctggtgtgtggtgtgcggtcttgcgcaaaatggctgccgtcgtgtcatcctggtggatgctgcacactcaaggtggatgaggagattcccccctttgtgtaaagtgctttgagtgtctagaaaagcgctatataaatacaaggaattattattactattattataaaacacacacaatgcaGGTTCAGAGATTTTTTATTACATAGATGACATTGCCATAAGCATATGGCTCATGGTCAGGATAGCAGCAACTTTCACCtagtcatatatttatatatgtacacacagttACAAACAAAGTGAGACTGCACAAGACATCTTAGACTGTAAACatctaatacataaaaaaaagaataataacaataataataataaaaaacaattaattcattctttttggAGATCTATGCCACGCTTTGTTCTCATTGTGTCCAATAAAttagtattgaaaaaaaaaatgtagtatgATCATTTGCTATAGAACTAGTGACATAATATAGTACAACTGTACCACACTTTGGCTATCGAActacagaaagaaaaaagaaaatactggATCATGATTCTCTGTAATTTCCTGATGGGTAACTGTTcacacattacatttattttcttgatTCTTTGATATTAATCTTCAACAATTTCATTTCCAAAATCCCCCCAGAATGAGAGATTAAATATAAGAATGCATTATTcagaaaggaaaataaaaaaatcctgcaCCTTAGTCATGGGAGTGCTCAACTGGCCCAGCGTCTACGATATGATGAAGAGTTTTAACTCCCTCCCTGAGCATCGTGAGCATCATGCAAGTTCCTCTATCCTAGAAGTGTCATTATTTTCAGAAACCAGCCATCAAAGCTGCATGAGTAAGATATGAGAGATTGTGCAAACATTTCTGAAGATGATTAAAAAGAAACTAATGTAAACTGAATTACAGAAGAGTTAGTCCACGTCTCCACAGATCAGCATAATTCTGTTCTCATAACCCTGTGATAAAGTAAACCATGTGGCACTGTGGGTAGTGAGTGATGTCTGCTACCCAAAGTGTTACTGAGAGAATGTCTCGTCTCTTAGCAACACGCAGGAACTGTCCTGGTTCTCCACATGTTGCTTAGGACCCAGCAAAGCTTCAATACAACAAAAATTCATCAGGCAGTTCATTACGTCTTCTACTTTTGTCAATAACTAAACAGCAGTTAAAGggacactccacttttttttttggaaatgaggTAGTTTTACCACACCCCTAAAGTTAAACGgttgtgtttaaatatttttgaagcCACTCAGACAATttctgggtctggcaggagcactttagcttagcttagcataaaatactgaatcagattagaccgttagcatctcactcaaaaaaagttttgataagTTACCTATTTAAAGCTCGAGTCTTCGGTAGATCGTCTGAATGgataatagcaaaaatagcaaaactcagctgtttaactctgGGTGACTTagaaaatgagcctatttccaaaaaaaaaaagtgttcctttaaaagaattcttcacccaaaaatgaaaattctgtcatttactcacatttCATTTGTTACAAAccgatttaattttgtttttattacacccctagagttaaacagttgagttttaccatttctgAAGTCATTTAGACAATCTCTGGGTCTgccgggagcacttttagcttagcttagcataaaacaTTATATCGACCGTCAGCATTTCACTCAAAAAAGTTTCACCTATTTAAAGCTCGAGTCTTCTGCAGTTAAATCACCTACTAAGACTGATGGTCAAGGAAAGTTGCTGTTTTCTAAGCAGATATAGCTTAGGACTATATTCTCATTCCAGCGTAagaatcaaggaactttgctgctgtaccatgatgtaactacaaacAAGTCAAGCTttgaataggaaaattatcaaagctTCTTTTCTGAAATTTAAGCGAggtgctaatagtctaatctgacTCAATCATCTATGCTTAagataagctaaaagtgctctcgccAGACCTGTAGATCGTctgaatgaatttaaaacaatGGGGAAATGCAACCATTTTACTCTAGTTGACttataaaatgagcctatttccaaaaaagtgttcctttaaaggaattcttcaccccaaaatgaaaattgtgtcattTACTCACATTTCATTTGTTACAAACctatttgtttttgttgaaatATATTATTATGAAGAATGCAGGTCGCCGACACTTCAACTCCACAGTAAATTTGATCCTGCTATCGAAGTCAATGAGTGCCATGGGTACCAgcagttttcaaaatatcttatttttcattcaacataagaaagaaacttaGGTTTAAAACCAGATGAGAGAGAATAAACAATGTGGTAATTttcattgttgggtgaactatccctttaacacaacAGTAATCGCTAAGAATAGGGTTGCACAATACTGGAGGAATAAATTGCATTGCGATATTTTTAGTTTCAGAGTAAAGGCACGATGTAGTCACTTATTTTCATGCAGGTCACAGATAACGCAATTTACCCAAGCCAATCCGAGAATCAGAaccactgtgtatatatatatatatacagaaataaCGCAGTTCACTGTGAAAACAATGCACATACACTGATGAGTCAAAATATCAGGAACACATGCCTAATAAATGTGTGGTTCTCGCTGTGCTGGTAAAACGGCACCAACCCAATGCAATACGGACTCCACAAGATCCCCCTGTTGTGAAGCCACCATAGATTGAATATTGAATATGTTAATCAACTCAACTGGAGATAGATCTGGGGAAACTGGAGTTCAATAAACATCTTGAACTTTCCAGCAAGTTCTTCAGATCATTCCTAGACAACATGTGCAGATTGGCAGCGGGCATTATCGTGCCGAAAGAGGCAATTTCCACCAGGAACATTAGTATTATGATGGGGTCGAAGAAATTTTAAAGAAAAGAGGGTTTCCAGACAGCTTGTTGTGTTCTTCAAGGGGTCCACACTCACATGCCTATTGTAGGTTCTTGTAACGTTGGACAGGAACTCAGACTATACAGCCCCATATGCTGTAAAGTATGATGCGCAAATATTAAAATACTGTGTGATTTGTGTCACCGTACACATACAGTTGGTTTGGACTAGGTGGAATTCCCATAATTGCATTTGTATATCAGAGAGTTTTGGGTGTCGTCAGTTTTTGGTTGGTCCCTCCTTGGAACCCTAATGGTGAATTGCTAACCACAAACCGTGTAGAGTAACTTAGAGTTACTCACACTCATTTCCCAAGCACTTTGAGATGCGTTTAGCTTCATAAGTACAAAGATTGAATTGTATCCGTGGTTTGTCCAGATGGATCCAGTGCCTTAGAAgccttaaaatacttttttttttaatctaaaaacaACATCTCTGCGTCTTCGTGTTTAGCCAATCTGTAATTTTTCTGAAATGACGTCATCTGGGCCTTAGTCACTTATTGCTACAAAGCTTAACAGCATCAGCAAAAATGCTGAACTGAACTGTAATGTTTACACACATGATCCATCTTCCCAGGCACATACTGGTCTGGCATGTATACTACATCGGTAGGAGTTGGTTTTAGCAGTTcttgagatgatgatgatgatgatagggAAAGCTCTGGCTTTGTGTCTATAGTCTCTGTTGCCATGCAATAACAACTTTCTCTTTAGATGCTCAGATTGTTTTTATCCTGCCTATATATTCTGCAACCTATACTTCAATTACTAAATTATTTACTTGCGTAGACTTGGAGATGGTCTACGATATTCTCTAAACCTATGATGACCTATCATTAAGTTTTGTCTCATCAGTGTATGTGTAATTATATGAACACTCACTGTTTTTTGGaaacaggctcattttacaatTCACCAAGTGTTAAACAgttgttttactatttttgaatccatttagccgATCTCCAGATGTGtctgagcacttttagcttagcttagcataggtcattaaatcggattagaccattagcattttgctcaAATTACCTTATAACTAAAttccctatttaaagcttgacttctctgtagttacattgtgtaccaagattgaaggaaaatgaaagttGCTAGTTCTAGgtcaatatggctaggaactatactccaGGGTAatgatcaaggaactttgctgacTAATTTTAGCAGCAGCTGGTGTAATAGTACAATGCATTGGTTGAAAATAGTTCCCATTATTACGCTAAAAATAAGACTATAGTTCCTAGTCATATCAAGCTAGAAAAGAGcatttcattttctgtcagtcttagtacacaatgtaactacagaagggaCTAGCAATAATTCCAGAGGAGTTAAACTAAGTAAAGTAAGGCTATTTCCAaataaagtggagtgttcctttacaGTGTAGCATGCACAGTTGAGAACTGCACTAAGCCACATGGCTATTTTGATCTCATTTcaatatactgtgcagccctagctTACAACATGTTTATACCAACACGTAAAGCTTCAAAATTGACCTTGAACATCTGAAATGCACCAAAAGGGGGCCGTTCACACAGTACACACTGCAATTACATTGCTAGTTTAAGTAAACATGCACTAGGTGGATGTGTTTGAGCGTTGCGCCGTTTGCATTGTCACATGCTTGACATAGCATTTTAAATCTGTGATGCTCAAGGTAAAGTGCTTactcaaaaaacttttttttcacccTTACACCACCTGCTTTTCAACTCACAAACACGTTCTATTGTGAATGGCCCCTGAAAGCCCCGATAAACTTCAAGCAAATATCCAATAACGAAGAGGTATTATGTAATCTCAAAGAAAATCAGGCCAAAATTAATGGCAAAGAACACTTTCCAGAAAAGTTTGTTCCCGCTGGTTAACACCTTCGAACTACCACTGACCCGTGGTGATTAGAGGTGTGTTCTGAGACTCTGCTTTCTTTGACGTGGAAATCTTCTCCGGTTCATCTCTTCGGTTCAGTCTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010026 lncRNA downstream 60992 10060636 ~ 10063668 (-) True XLOC_005199
TCONS_00011102 lncRNA downstream 886866 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00011101 lncRNA downstream 896031 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00010000 lncRNA downstream 1037094 8996035 ~ 9087566 (-) False XLOC_005182
TCONS_00010003 lncRNA downstream 1040092 9063675 ~ 9084568 (-) True XLOC_005182
TCONS_00010030 lncRNA upstream 85428 10215330 ~ 10220119 (-) True XLOC_005201
TCONS_00010040 lncRNA upstream 304554 10434456 ~ 10441613 (-) True XLOC_005208
TCONS_00010042 lncRNA upstream 335723 10465625 ~ 10470405 (-) True XLOC_005209
TCONS_00010801 lncRNA upstream 639229 10769131 ~ 10772946 (-) True XLOC_005214
TCONS_00011104 lncRNA upstream 1517290 11647192 ~ 11649690 (-) True XLOC_005220
TCONS_00010025 mRNA downstream 85790 9949941 ~ 10038870 (-) True XLOC_005198
TCONS_00010024 mRNA downstream 328423 9789312 ~ 9796237 (-) True XLOC_005197
TCONS_00010023 mRNA downstream 334175 9781524 ~ 9790485 (-) False XLOC_005197
TCONS_00010020 mRNA downstream 424055 9619909 ~ 9700605 (-) True XLOC_005194
TCONS_00010019 mRNA downstream 506890 9597151 ~ 9617770 (-) True XLOC_005193
TCONS_00010027 mRNA upstream 69317 10199219 ~ 10300101 (-) False XLOC_005201
TCONS_00010028 mRNA upstream 70024 10199926 ~ 10275320 (-) False XLOC_005201
TCONS_00010029 mRNA upstream 70199 10200101 ~ 10220036 (-) False XLOC_005201
TCONS_00010031 mRNA upstream 174533 10304435 ~ 10315039 (-) True XLOC_005202
TCONS_00010032 mRNA upstream 207772 10337674 ~ 10352001 (-) True XLOC_005203
TCONS_00010022 other downstream 453523 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010021 other downstream 476315 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010015 other downstream 607679 9510580 ~ 9516981 (-) False XLOC_005191
TCONS_00010016 other downstream 607707 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010009 other downstream 760787 9360316 ~ 9363873 (-) False XLOC_005188
TCONS_00010060 other upstream 2205314 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010077 other upstream 3473837 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010097 other upstream 5451418 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010103 other upstream 6278406 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010104 other upstream 6285908 16415810 ~ 16434838 (-) False XLOC_005253

Expression Profile

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