RNA id: TU256008


Basic Information

Item Value
RNA id TU256008
length 672
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id G172755
representative True

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 293647 ~ 351538 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGTCTCGGGCACAGAGAGCAGGTGGTGGACACGATCCTGTCTGCGGTGTGACTGACGGTATTATCAACAAAAATGTACTATAAGGTCAGCGGAGTAACCGGAAAATTAACGGGAGCCACAGCAGCGTCCGCTTACAGCCCGCAGGGGCTGAGGCCCACGGTTCCTCTCTCAAGCTCCTCCTATGGTCTTTGCTTTACCGACCAAGCTCGTATCTGAGACAGTGGTTCACTACATGGGAATCAACAAAATCCCTGATCTGCAGAAGCTTTTCCAGAAAGGTGATGGAGCCCCGGTTCACCTGAAGCGTGAGTCATGGACAAAATGTTGTATAGGACCACGATGGGCTTGACGATTGGCATAGCGCCATTAAACAGTAGAGGGTGCCGCCAATCGTCAAGCCCATCGTGGTCCTATACAACATTTTGTCCATGACTCCACGCTTCAGGTGAACCGGGGCTCCATCACCTTTCTGTAACAGgtCTGGAAAAGCTTCTGCAGATCAGGGATTTTGTTGATTCCCATGTAGTGAACCACTGACTCGGTCTCAGATACGAGCTTGGTCGGTAAAGCAAAGACCATAGGAGGAGCTTGAGAGGGAACCGTGGGCCTCAGCCCCTGTCAGGACAAACACAATGACATAGATGACATTAGGGCACACACAAATGACTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
ko00350 Tyrosine metabolism
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255962 lncRNA upstream 234209 59199 ~ 59438 (+) True G172733
TU255950 lncRNA upstream 258316 34860 ~ 35331 (+) True G172723
TU256031 lncRNA downstream 89516 441054 ~ 453300 (+) True G172777
TU256068 lncRNA downstream 161036 512574 ~ 513327 (+) True G172804
TU256041 lncRNA downstream 202226 553764 ~ 554790 (+) False G172784
TU256044 lncRNA downstream 202226 553764 ~ 687206 (+) True G172784
TU256063 lncRNA downstream 317825 669363 ~ 672910 (+) True G172800
XM_043229509.1 mRNA upstream 3416 284894 ~ 290231 (+) False LOC122332211
XM_043229508.1 mRNA upstream 3416 284906 ~ 290231 (+) True LOC122332211
XM_043229513.1 mRNA upstream 49354 239348 ~ 244293 (+) True LOC122332217
XM_043229507.1 mRNA upstream 179359 88714 ~ 114288 (+) True mark3a
XM_043229501.1 mRNA upstream 179359 88716 ~ 114288 (+) False mark3a
XM_043229483.1 mRNA downstream 82257 433795 ~ 465063 (+) True LOC122332182
XM_043229514.1 mRNA downstream 90225 441763 ~ 444452 (+) True LOC122332218
XM_043229517.1 mRNA downstream 94872 446410 ~ 456130 (+) True LOC122332221
XM_043229516.1 mRNA downstream 96967 448505 ~ 456130 (+) False LOC122332221
XM_043229466.1 mRNA downstream 124883 476421 ~ 478867 (+) True LOC122332165
TU256032 other downstream 95003 446541 ~ 456080 (+) True G172778
TU255966 other downstream 113900 465438 ~ 482032 (+) False G172737
TU255972 other downstream 113900 465438 ~ 469500 (+) False G172737
TU255975 other downstream 113900 465438 ~ 469500 (+) True G172737
TU256247 other downstream 454019 805557 ~ 811855 (+) False LOC122332175

Expression Profile