RNA id: TU256063


Basic Information

Item Value
RNA id TU256063
length 3316
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G172800
representative True

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 669363 ~ 672910 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGATTTTGGAAGTTGGCTCAACAAACTTTTAAGAGGGTTTAAATATGAAGCAGCAAGGTGACATCCCGAACACAATACATTCACAACGCTGCACAATCTCACTTAAAGTGAGATACTAACATGTAAATTTTTCGAAGAGCTGAGGAGCCCTGGAGGAAAAAGTCATCATCCCCATCCCGGTGCTTGTGGAATGTGGATATCGAGTGAAGGTTTCACACAGCTTCTGCATTTCCTGTTTGGGCATTAAACAGGTTTAGGGAGCTGTGTCCAACCTCGAAAGATGTCCTCACTGCATGAAGTTCTCAACTAAATCCAGAGAGAGGAGACTCTGCGTGGCAGTAGCTGGGAAGTTGGACCCATGCCTCTCTGCTCAACTCATAAAAGGACAGATGGATTGTCTCCAAGCTGTCAGCTCATGGGGGGAGATGATGGAACTTAAGCATTGTCGACCATCCTCAAGGATGAAAATGATGACGCTATTCTTCCTCCCAAACCAATCATGCCCGCTGAGTGCACAGGATGAGAGGCTAAATCTAAATGTAGCTGGGTTACCTCTGAAAGTGAGATAGACAATTCAGAATGTGAGGGCTGCCTTGACATGTTCTTTATATAATCTCAAATGAAGGGTGTTTGAGGGATGATGCACAAATAGAAACATCGCTCCTTTCTTGTGTTCAGTTTCAGATATGCTGTGCTTCATTTAGGACCTCCTGGATAATGGCAAAGCCTTTTCTACAGTTAAGGTTTATCTGTCCTCTATCtgtacaataacaataacaataacaatattgtgTTATGGGGCCAATCGTGGCCTAATGGAGACAGAGTCAAACTTTGAAGGCTGCAGGATCGAGCCTCAAGTCCGACAGGAATTGTTGGTGAGGGGAGTGAATAACCAGAGgcccttgagcaaggcactGAACCCCCAGCTGCCCAGCAGAACTGGCTGCCCACtgctccaggtgtgtgtgtgtgtgttcactactGTGTGTGCACTTGGATAAGTTAAATGCTGTGCTGAATTTCCAAGTATGGATCACCATACTTGGCCATGTTGCTTCACTTTCACTTCTAATGCGTATAGGATTATGAGCACGCTCTGCCAGTGGTATGACTACATCCTGGGCTCTGTTTAGAGATATTTCTGTTCAAAAAATTAGCGTGGATGCCAACTGGTCTTCTCCACACACATATTGTCATTTCTGTAGACTGGATGTGACCGAACCCTCTCTGGCCCACTCAGTCCTGGGAGTGAGTAGTCAGGGtgaataatgcaatttattaaggGTGAATTCCTCATATTACTTTCAACTTCATTAGAAGTTATGATTCAGATAATAACCTACTCGTAATTTAGTCTGCTTAATCAGCATATCAGCAATATGAGAGTTGTCTGTGTCACTTAGTGAGATACTGAATGAATGTTAGAAAGAGAACATTAGATTACTGGCATAGTGCCAGTTCTCTGATAACATGAAGTGAGGTATCTCACAAACATTGTCCTCCTTGCCTTTACTGCATGGAGAGGAGATATCCGGAGAGGGATGAAATGGCAGGTATCCGCAGTGTATATACCTACCTCCCTGATCGCTGCAGCGATTGGTCTGCCGTAGTTGGCAGACGTGTTGTTATCATTGCTTCCCTGATTGGTCACATCTGAGATGTCAGTAACCTAATGAtctgaatttattaatttactccTTTATTCATTAATGAACAGATCTCTAATATGTATTTCTCAGacacttgtttaaaaatgttttcattgacAGAGCAAAAATACGGCAAGTAAGTGTCCATGCTTCTTGATCATCTATACACACCCCAGCTGTGTTGACAGCAGCTCCATAACCGGTGGAGACGCCGCAGCcgagcagacacactctgtcgaGTGGGGCATCATCATGGATCTTGACCAAATAAATCTGGTTGATGACGATGTACTCAGAAAAGAACCTGCATTCTCCACATTGAGCGATCGCGACTGGGATAACCTTATCACCTGTTCACCACAATACACAGATggttttttgatgttgttattACACCAGCATATTTACACTAAGAGTTAtagggaacaaaaaaaaaatcatttacttatCCTTACATTGTTCCTAGGCTTATggaatacataatttattttattttttattttttttgtttattattttgtttgtttgtttttaaattttttatttagctttaattcagttttagttttagtagttGCAGTACTTTTTTTCAGCTTGTCGCCAAGgcaagattgttttttttttttttttatgttttttaactaatataatataatttacttcTGCCTCAATTCATTTTGTGACTTAAAATAAGttgattcatttacaaaaaaaacaaaacaactttggTCTGTATTTTACTCAGAGTTGTCAATTGTCTTTAGAAAATGTCATATTATGGATGCATATACCTTtatgtcatgtgtgtgtgttttaagttgTATGTAAAACAGCCAGTATAAGTACATAGTTTCTGTCCACGGAAGTGAGTCATACAGGTTAGGAATAAACATggggtaaataaatgattaccTTTATTTTTGCTGAGCTATACTTTTTAAGtagaaataaagacattttagttTGTGACCTGGTTTGAACTCAGTGACTCCAGGTCCCACACTCTCCACCACACCAGCTCCCTCATGTCCCAGGACAGTGGGAAAACCTTTCTTGTTCTTCCCTTCAAACAGGTGGTAAAGGTCGGTGTGGCACAGACTTGAAGCTACAATCTATGTGATTGGGAAAATCCTTATTTATCAAAACAAGTTAATGGTGTTGCATGCTTTAACAACTGATTTAGTTCTTTGGATTTATGACAACTTTCATGGGACATTTCCAACCTTAATTCGTATTTCTCCTTCCTGAGGTGGGCGACTTCTATTTCCTCTATTACCAGAGGTGCATTGGGTTCCCAGGCAACAGCCGCCCGGCATTTAATCACCTTTAGCACATAAAAGAACTTGGTGTATAATGTTTGATAGATGTTAAATGGTTAACTACAGACATAAATGCTGCGTTTGAGTGGTTCCATGATCTCTGCTCTTAGATCAAGGATCAAATCTGTGATTTCATCATCACTAAAGATAAATTTCTAACTCAGTGAAACTGTACATGTAGTATCAATTTGATGATAAACTAGGAAAAAATCGCCTTATTTTCAAGAAATTAATTATGCACAAATGTCACTTTGCACTTTTACATGTGGCATCCAAACCTTTTCATGTagtctttatatattatttagtatttatatgAATAGTCATTCTTGATATATTGCA

Function

GO:

id name namespace
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256041 lncRNA upstream 114573 553764 ~ 554790 (+) False G172784
TU256068 lncRNA upstream 156036 512574 ~ 513327 (+) True G172804
TU256031 lncRNA upstream 216063 441054 ~ 453300 (+) True G172777
TU256008 lncRNA upstream 317825 293647 ~ 351538 (+) True G172755
TU255962 lncRNA upstream 609925 59199 ~ 59438 (+) True G172733
TU256042 lncRNA downstream 10805 683715 ~ 687206 (+) False G172784
TU256057 lncRNA downstream 52317 725227 ~ 725907 (+) True G172794
XM_043229484.1 mRNA upstream 2106 658117 ~ 667257 (+) True LOC122332186
XM_043229495.1 mRNA upstream 94497 566459 ~ 574866 (+) True LOC122332204
XM_043229494.1 mRNA upstream 120726 547154 ~ 548637 (+) True LOC122332199
XM_043229466.1 mRNA upstream 190496 476421 ~ 478867 (+) True LOC122332165
XM_043229517.1 mRNA upstream 213233 446410 ~ 456130 (+) True LOC122332221
XM_043229473.1 mRNA downstream 17705 690615 ~ 698060 (+) True LOC122332170
XM_043229475.1 mRNA downstream 17705 690615 ~ 698060 (+) False LOC122332170
XM_043229476.1 mRNA downstream 21924 694834 ~ 698060 (+) False LOC122332170
XM_043229471.1 mRNA downstream 23959 696869 ~ 718734 (+) False LOC122332167
XM_043229468.1 mRNA downstream 31646 704556 ~ 718734 (+) True LOC122332167
TU255966 other upstream 187331 465438 ~ 482032 (+) False G172737
TU255972 other upstream 199863 465438 ~ 469500 (+) False G172737
TU255975 other upstream 199863 465438 ~ 469500 (+) True G172737
TU256032 other upstream 213283 446541 ~ 456080 (+) True G172778
TU256247 other downstream 132647 805557 ~ 811855 (+) False LOC122332175

Expression Profile