RNA id: XM_043229480.1


Basic Information

Item Value
RNA id XM_043229480.1
length 1071
RNA type mRNA
GC content 0.55
exon number 2
gene id LOC122332175
representative False

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 789452 ~ 811855 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATGGTTACATCATTGCAGTGCCATAGATCTCAGGAGTGTGTTGAACTGCTCTCTTCACTTCATTGGAATGTGGAAATCTTGTATGAGCAACCTGTCGTCTGGATGTGTAACTCTTGAATGCAGGCCAACGTTAGGTCAGAACGTGGCCTGAGGAATGGGGGCGTTTTTAGATAAGCCCAAAACAGAGAAATACAATGCGCACGGGGAAGGGAACGGCCTGCGCTTTGGCCTCAGCAGCATGCAGGGCTGGAGGGTAGAGATGGAGGATGCGCACACAGCAGCCGTAGGCCTGCCACATGGCTTGGATGACTGGTCCTTCTTCGGCGTGTACGATGGGCATGCTGGCTCGCGTGTTGCAAACTACTGCTCCAAACATCTGTTGGAACATATCGTAGCTGCGGGGTCGGCAGATGAACTGCGGAAGGCTGGATCTCCGACACCCGAGACGCCAGCCATAGAAGCGGTGAAGAGGGGTATCCGCGCCGGCTTCCTGAGGATCGACGAACACATGCGCAGCTTCACAGACCTGCGGAACGGCATGGACCGCAGCGGCTCCACCGCGGTGGCTGTGCTGCTCTCTCCAGAACATCTGTACTTCATTAACTGCGGGGACTCTCGGGCCCTTCTCTGCCGCAATGCTCAAGTCTGCTTCTCCACGCTGGACCATAAGCCCTGCGACCCACGGGAGAAGGAGCGCATACAGAACGCGGGTGGCTCTGTGATGATCCAGAGGGTTAACGGATCGCTGGCTGTATCCCGAGCACTGGGTGACTATGACTACAAGTGTGTTGAGGGCAAGGGCCCCACAGAGCAGCTTGTGTCACCGGAGCCTGAAGTGTTCGAAATCGCTCGGTCAGATGCAGAGGATGAATTCGTGGTGCTGGCGTGTGACGGTATTTGGGATGTGATGAGCAACGAGGAGCTGTGTGCCTTCGTGCGATCGAGGCTGGAGGTGACGGATGACCTTGAGAGAGTGTGCAATGAGGTTGTGGATACTTGTCTACATAAGGTACAGCTCCTTACTCTTAAAGTTCTCCTATTATGCCATTTCTAATAttgcctttcatgc

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256057 lncRNA upstream 72611 725227 ~ 725907 (+) True G172794
TU256044 lncRNA upstream 111312 553764 ~ 687206 (+) True G172784
TU256042 lncRNA upstream 111312 683715 ~ 687206 (+) False G172784
TU256063 lncRNA upstream 125608 669363 ~ 672910 (+) True G172800
TU256041 lncRNA upstream 243728 553764 ~ 554790 (+) False G172784
XM_043229471.1 mRNA upstream 79784 696869 ~ 718734 (+) False LOC122332167
XM_043229464.1 mRNA downstream 89037 893791 ~ 902091 (+) True LOC122332161
TU255966 other upstream 316486 465438 ~ 482032 (+) False G172737
TU255972 other upstream 329018 465438 ~ 469500 (+) False G172737
TU255975 other upstream 329018 465438 ~ 469500 (+) True G172737
TU256032 other upstream 342438 446541 ~ 456080 (+) True G172778
TU256247 other downstream 803 805557 ~ 811855 (+) False LOC122332175

Expression Profile