RNA id: XM_043229471.1


Basic Information

Item Value
RNA id XM_043229471.1
length 1973
RNA type mRNA
GC content 0.55
exon number 2
gene id LOC122332167
representative False

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 696869 ~ 718734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGCGACGATGTGTGCGGGGCTGTAGTCAACATCCGAACGAAAGGAGATAAAATCGCCGTCTGGACAACTGACTACGAGAACAGAGAGGCCATAACGCACATAGGGTGAGACTCTCACGCGTTCACGCTACATGTGGCCATGCTGTTCTCTCCGTTCTCTTGTGCTCTGGGGCTCTCCCTCCTGCCACTCCTCCTGTTTCAGTGCCCCGCCCACGCCTGCCCAGCCCGCTGCGAGTGCTCTGTGCCCACGCGTTCTGTGTCATGCCATCGCAGACGCTTAGCGCAGGTGCCTGAAGGCATCCCTATAGAGACAAGGGCACTGGACCTCAGTAAAAACCGTCTGCGCATTGTGACACCACAGAATTTCTCCTCACTGCTGTTGCTTGAGGAGCTGGACCTCAGCAACAACCTGTTGTCATCTGTGGAACCTGGCAGCTTCCGCACTCAGCCGCGGCTCCGCTCGCTCCGACTGCGCAGCAATCAGCTGACTCTGCTGCCGCGTGGAGCGCTGGCCGGCCTCAGCGAGCTCACTCTGCTGGATGTCAGTCAAAACCGTCTTGTTATTCTGCTGGACTACGGCTTTGAGGAGCAGCGGAGGCTGCGGGTACTAGAGCTGAGTGATAATGAGCTAGTGTTTATCGCCCCACGGGCCTTCAGCGGCCTGGCGTCCCTGCGCTCTCTAACGCTGCAGCGATGCAACCTGAGCACAGTGCCCACACATGCTCTCGCACATCTGCATGGCCTAACCAGCCTGCGATTGCGGGACTTGGGAATCACGGAGCTTCAAGCACACGCATTTAAGGGTCTGCCACGACTGAAACACCTGGAAGTGGACCGCTGGCCTTTGTTAGAAGGGTTTCCGACCTCCGCTTTGCAGGGGCTGAACCTCAGCACACTCTCCATTACCCACACCAACTTGACGTCCGTGCCAGTGGTGACACATCTACTGTATCTAACGCATCTCAACCTGTCTTACAGCCGTATACGTGTCCTGCCAGCAGGGTGGTTAAGGGGAATGGACCGGCTGGAAGTTGTGCGTGTACGACAGtctaacctgctcagtgtggaACCTCAAGCCTTTCAAGGAGCCTCTTCGCTGCGCCTTCTTGACCTTTGTTACAACCGTCTCTCCACGCTTGAAAGAAGTGTTTTTCCTGCTTCTGAGGCCCTGCAGactcttctgattggccagaaCCCGTTAGTGTGTGACTGTCGTCTACGCTGGCTCCTGGAGAGGACTCCACCTTTGCTGTATGGTGATGTTCAACCTGAATGTAGTGCTCCTGCTCCCTTGGCTGGGAAGCCACTTAGGGACCTGATGGAACCTCAAATCTCTCGCTACGTTATCTGCACCAAGCCCAGGGTTGTCTCAATGGCAACTTACCCAGCACAGACAGAAGAAGGACAGAGAGCTTGGCTATACTGCAGTGCGGACGGGGCTCCACCACCTTCTGTGTCATGGCTGACACCGCATAGGCGGCACATTACCACAAAGAGCACGGGAAGAATGGTGGTCCACACAAATGGCTCGCTGGAGTTCCGCATGGCAGAACCTCAGGATAGTGGCATGTACGTGTGCGTGGCATCGAACCCAGCAGGCAATGCCACTCTGTCCATCACTGTAGCTGTGAAAAGCTCTGGAATCAGGGATAGAGCCCTTTACGCCAACCGCAGCTTTCTGTTTGACTCCGACTACAACAGTTCCCTGATTAATGGCACGGAGGAGTACACCATCAGGGTAGTGCTGGACTTCACCACCATCCTGGTCTCCACAGCAATGGGCTGCCTCAGCTTCCTGGGTGTCGTCTTGTTctgtttcttgttgttgtttgcatGGAGCCGTGGCAAAGGGAAGCACAGAGGTAGCGTGGACATTCAGTACGTCCCACGAAAGCGGAAAGGCGCAAACTCAGAACTTACAGAAACAAGTGGGCCCAGACGAGTCAACATGAAGATGATCTAAACTTTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256044 lncRNA upstream 9663 553764 ~ 687206 (+) True G172784
TU256042 lncRNA upstream 9663 683715 ~ 687206 (+) False G172784
TU256063 lncRNA upstream 23959 669363 ~ 672910 (+) True G172800
TU256041 lncRNA upstream 142079 553764 ~ 554790 (+) False G172784
TU256068 lncRNA upstream 183542 512574 ~ 513327 (+) True G172804
TU256057 lncRNA downstream 6493 725227 ~ 725907 (+) True G172794
XM_043229484.1 mRNA upstream 29612 658117 ~ 667257 (+) True LOC122332186
XM_043229495.1 mRNA upstream 122003 566459 ~ 574866 (+) True LOC122332204
XM_043229494.1 mRNA upstream 148232 547154 ~ 548637 (+) True LOC122332199
XM_043229466.1 mRNA upstream 218002 476421 ~ 478867 (+) True LOC122332165
XM_043229516.1 mRNA upstream 240739 448505 ~ 456130 (+) False LOC122332221
XM_043229481.1 mRNA downstream 70718 789452 ~ 810837 (+) True LOC122332175
XM_043229480.1 mRNA downstream 79784 798518 ~ 804754 (+) False LOC122332175
XM_043229464.1 mRNA downstream 175057 893791 ~ 902091 (+) True LOC122332161
TU255966 other upstream 214837 465438 ~ 482032 (+) False G172737
TU255972 other upstream 227369 465438 ~ 469500 (+) False G172737
TU255975 other upstream 227369 465438 ~ 469500 (+) True G172737
TU256032 other upstream 240789 446541 ~ 456080 (+) True G172778
TU256247 other downstream 86823 805557 ~ 811855 (+) False LOC122332175

Expression Profile