RNA id: XM_043229475.1


Basic Information

Item Value
RNA id XM_043229475.1
length 1757
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC122332170
representative False

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 690615 ~ 698060 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGTTTCAGTCATACAGTCAATCTGAACGAGGAGCATGTCGTTCAAGATGACACAACACGACCGTGGCGTGAGAGTATGCGTGGGAGCGGTAGTGtatatacacagacaaaacagGCGTCTCGCTGTATATTTGAGACACGGCTTGTGATTCGCTCGCGGCACtgcgtcagccaatcagagggcAGCACTGAAGAGAAGCGTGAACGTCCCTTATGAGGCCTGTGAGCGACTCACGTAAAATGGCGACGGCGGAGCCGAGTGAAGAGGAGAACTCAGAAGAGACCAATCAGGAGATTGTCAGCCCTGAGAGCTACATCAAACACCCCCTACAGAACAGatggtCTTTATGGTTCTTCAAAAATGACAAGAGCAAAACATGGCAGGCCAATCTCAGACTGATCTCCAAATTTGACACAGTGGAAGATTTCTGGGCGCTTTATAACCACATTCAGCTCTCCAGTAATTTGATGTCAGGGTGTGACTACTCACTTTTCAAGGATGGTATTGAGCCTATGTGGGAGGATGAGAGGAATAAAAGAGGAGGCCGCTGGCTCATCACTCTCAACAAGCAGCAGAGGAAGTATGACCTGGACCGCTTTTGGTTGGAAACTCTGCTGTGCCTCATCGGCGAGGCCTTCGACGACTACAGCGACGATGTGTGCGGGGCTGTAGTCAACATCCGAACGAAAGGAGATAAAATCGCCGTCTGGACAACTGACTACGAGAACAGAGAGGCCATAACGCACATAGGGAGGGTGTACAAGGAACGATTAAGCATCCCTATGAATATGACCATCGGCTATCAGTCTCATGCTGACACGGCCACTAAGAGCGGCTCCACCACTAAGAACAAGTTTGTGGTCTGAATATCTTCAAGGGCCTGGATCTCACTCTCTCCTGTCTTTTTCTCCGCCTCTTAAAACCAaagcaacagcaaaaaaaaaaaaaaaaaaaaaaactgactgaaCTGCCATGAAACCCCCTTTGCAAGTACACTTTTCCCAAAAGCCCTTCACAAGCACACTCCTGGACTCGCACTACCAATGAGGTTTGCAGCACAGACATAATTTGAGAATAACAGTACCTCTGCTGCTCCTTACATTCACACGCATTATAAGTATTACTTCTGTATCATGCTACACTACACGTTCTCGCTTCAACCCAccaaacactcacacaccacTACACCGTTTTcaccctgagaaaaaaaaaagagcatgcaCCTAATGAAGTTACATTCAATGTTTACCCCAGGCAAGTCTTCAGAGTTTGTAAAGTatttaataggtttttttttgtttttgttttttttttggaagaaattgtcaatttatttaatggcagaggaaagaaaatgtttgGAAGTGTTCTTTTATCCAGCAGCTTTGCTGCTTCAGTGCCTAatgaacataaacattttaatttattcagattaATCGTCAGCAGTTCACCGAGATGGTATCTGGTCGTTGAGTGAATGTAATCAAGCTAATCTTCATAGAGCTGCCTTACGTCTTTAAGCGTTAACTTGATTAAATTTGGGGGTTTGCAATTCAAgataagtgtttttatattgtgaatTTTTGATGCATCATAAGTTTACATTCCTTGTTAGAATAGTAAACTGTGGGATTTGTTTTGCAGTGCTGTAACAGATGAATTGTGCTTGTCTGGATGTCATTGGCTTGAGTTGGCTCTTCAATAAGATAGCAGCGTTATCGAATAGgccctgaaaataaaatagatttatgtTGA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256044 lncRNA upstream 3409 553764 ~ 687206 (+) True G172784
TU256042 lncRNA upstream 3409 683715 ~ 687206 (+) False G172784
TU256063 lncRNA upstream 17705 669363 ~ 672910 (+) True G172800
TU256041 lncRNA upstream 135825 553764 ~ 554790 (+) False G172784
TU256068 lncRNA upstream 177288 512574 ~ 513327 (+) True G172804
TU256057 lncRNA downstream 27167 725227 ~ 725907 (+) True G172794
XM_043229484.1 mRNA upstream 23358 658117 ~ 667257 (+) True LOC122332186
XM_043229495.1 mRNA upstream 115749 566459 ~ 574866 (+) True LOC122332204
XM_043229494.1 mRNA upstream 141978 547154 ~ 548637 (+) True LOC122332199
XM_043229466.1 mRNA upstream 211748 476421 ~ 478867 (+) True LOC122332165
XM_043229516.1 mRNA upstream 234485 448505 ~ 456130 (+) False LOC122332221
XM_043229468.1 mRNA downstream 6496 704556 ~ 718734 (+) True LOC122332167
XM_043229470.1 mRNA downstream 6808 704868 ~ 718734 (+) False LOC122332167
XM_043229467.1 mRNA downstream 6982 705042 ~ 718734 (+) False LOC122332167
XM_043229469.1 mRNA downstream 7154 705214 ~ 718734 (+) False LOC122332167
XM_043229481.1 mRNA downstream 91392 789452 ~ 810837 (+) True LOC122332175
TU255966 other upstream 208583 465438 ~ 482032 (+) False G172737
TU255972 other upstream 221115 465438 ~ 469500 (+) False G172737
TU255975 other upstream 221115 465438 ~ 469500 (+) True G172737
TU256032 other upstream 234535 446541 ~ 456080 (+) True G172778
TU256247 other downstream 107497 805557 ~ 811855 (+) False LOC122332175

Expression Profile