RNA id: XM_043229494.1


Basic Information

Item Value
RNA id XM_043229494.1
length 972
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC122332199
representative True

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 547154 ~ 548637 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCTGTGTCTCGTGACGTCAAGATGCCCCTTCTGTTGACAGCCAAGACCGGAAGTGTCGCCAGCAGCCATCTGGCTCGCAGCCCTTCGGCCCTATCTCAGGTCAGCACtagtcattttgtgttttaaaaagaaaaatatgtcaaGATCTAATCGGACCGCAAACGATACGGAGGTGCGTCCGCGGGATGCCTTAAACGCGACGCGAGAACGAAGCGGATGTCGATGCCAACATGAGGCTCCTGTCAGACAAGCGAACAGCGAACAGAACGACTTCAGGGGACGAGAAAGAGTGCACGGTCACTCTGTAGCAGAGCCGCAGCCAGAGGCTCCCTTGGTGGACGACTGCGAGAGGCTGGGCACTCTTTTCGGGGAGCTCAATAAGTGTTTGAGAGGCATTGGTTTTACTCAGCTTTACTTCGGGGAGAAGATCGTGGAGCCCGTGGTCGTGCTGGTGTTTTGGATGCTGCTCTGGTTCCTCGGTATCCAAGCCCTCGGCCTCGTGGGAACTCTATgcattattatcatttacatCCAGAAATAGCAGACGTAAAGGTAGACGAGACAGACGGAGGTTCATTTGCCACCCACAGCCCGTGCCAGTCAAAGAGAGGAGAGACTCCTTTCTACACCAGATGAGCTTTGTGAATGTCATTTGAAAGTTTTACCCGATCCGTACGTTTGGGTCTGTGTCAGTTGCCTTTTAATATGGAGTGCGTACAAGAGGTGAGTTAATGAAGTTCATCGGAGGATTTGCTTTAACTGCTGAAATGATTCCTCTGGTCTGTGTGGACTGTGTGTTAGCTGTGAAAGGTACTCGTGAAAAGCATGCTTCCCTTCGATATTTGCATTGACAACATGGGTGCATAAACAGAATCTAATGTACATATCAGTTATACGGTCATTGCCGTTGTCGAATGTATTACTCTTAATCACCCAGGTGTCAGTCTTGCATTCTCCACACAATTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256068 lncRNA upstream 33827 512574 ~ 513327 (+) True G172804
TU256031 lncRNA upstream 93854 441054 ~ 453300 (+) True G172777
TU256008 lncRNA upstream 195616 293647 ~ 351538 (+) True G172755
TU255962 lncRNA upstream 487716 59199 ~ 59438 (+) True G172733
TU255950 lncRNA upstream 511823 34860 ~ 35331 (+) True G172723
TU256041 lncRNA downstream 5127 553764 ~ 554790 (+) False G172784
TU256044 lncRNA downstream 5127 553764 ~ 687206 (+) True G172784
TU256063 lncRNA downstream 120726 669363 ~ 672910 (+) True G172800
TU256042 lncRNA downstream 135078 683715 ~ 687206 (+) False G172784
TU256057 lncRNA downstream 176590 725227 ~ 725907 (+) True G172794
XM_043229466.1 mRNA upstream 68287 476421 ~ 478867 (+) True LOC122332165
XM_043229483.1 mRNA upstream 82091 433795 ~ 465063 (+) True LOC122332182
XM_043229517.1 mRNA upstream 91024 446410 ~ 456130 (+) True LOC122332221
XM_043229516.1 mRNA upstream 91024 448505 ~ 456130 (+) False LOC122332221
XM_043229514.1 mRNA upstream 102702 441763 ~ 444452 (+) True LOC122332218
XM_043229495.1 mRNA downstream 17822 566459 ~ 574866 (+) True LOC122332204
XM_043229484.1 mRNA downstream 109480 658117 ~ 667257 (+) True LOC122332186
XM_043229473.1 mRNA downstream 141978 690615 ~ 698060 (+) True LOC122332170
XM_043229475.1 mRNA downstream 141978 690615 ~ 698060 (+) False LOC122332170
XM_043229476.1 mRNA downstream 146197 694834 ~ 698060 (+) False LOC122332170
TU255966 other upstream 65122 465438 ~ 482032 (+) False G172737
TU255972 other upstream 77654 465438 ~ 469500 (+) False G172737
TU255975 other upstream 77654 465438 ~ 469500 (+) True G172737
TU256032 other upstream 91074 446541 ~ 456080 (+) True G172778
TU256247 other downstream 256920 805557 ~ 811855 (+) False LOC122332175

Expression Profile