RNA id: XM_043229495.1


Basic Information

Item Value
RNA id XM_043229495.1
length 1409
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC122332204
representative True

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 566459 ~ 574866 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAATCTCTGTGTTCCTTTTCAATCGTCTCTGCAAAACGACTACATCGAGAAATGGCCACTGCAGGGAAGGTGATTAAATGCCGGGCGGCTGTTGCCTGGGAACCCAATGCACCTCTGGTAATAGAGGAAATAGAAGTCGGCCCACCTCAGGAAGGAGAAATACGAATTAAGATTGTAGCTTCAAGTCTGTGCCACACCGACCTTTACCACCTGTTTGAAGGGAAGAACAAGAAAGGTTTTCCCACTGTCCTGGGACATGAGGGAGCTGGTGTGGTGGAGAGTGTGGGACCTGGAGTCACTGAGTTCAAACCAGGTGATAAGGTTATCCCAGTCTCGGTTGCTCAATGTGGAGAATGCAGGTTCTGCAAGagtccaaaaacaaacttttgtgAGCGCAACTGgcaaAATGATCATGTTGATTTGATGTCGTATCCCACAACACGTTTCACTTGCCGTGGCCGGCCTATTCTGCAGTTCGCAAGCACCGGTACCTTTTCTGAGTACATCGTCATCAACCAGATTTATTTGGTCAAGATCCATGATGATGCCCCACtcgacagagtgtgtctgctcgGCTGCGGCGTCTCCACCGGTTATGGAGCTGCTGTCAACACAGCTGGGgtCACACCAGGCTCAGTGTGTGCAGTGTTTGGACTGGGGGCAGTAGGACTGGCTGCAGTCATGGGCTGTAAAAACGCCGGAGCCTCCCGTATCTTTGCTGTGGACATTAATGAGAAGAAGTTTGAGAAGGCAAAGGTCTTTGGTGCCACTGATTTTCTGAACCCGAAGGCATATAATAAACCCATCTCTGAAGTGCTGGCAGAACTTACCAATGGAGGAGTGGATTTCTCACTCGAGTGTGTGGGCAACGCTGAAGTAACGAGAGCTGCACTGGAGTCATGTATTAAAGGATGGGGTGTGAGTGTTTTGGTTGGCTATACTGATGTAGACTTTTCTGCACAACCGAGTCAACTTATAAATGGCAAAACCTGGAAGGGAACCCTATTTGGAGGTTTTAAGATCAAGGATTCGCTTCCAAAACTGGTTAATGAATACATGACTGGCAAAATAATGCTTGACGAGTTCATAACCCACAAAATGGATCTGGAGCAGATCAATGATGCCGTCAACCTCATGAAAACTGGACAATGCATTCGGTGCATCATCACTATATGCAAATGAGAATCAAGTCATCTCCACTCAACTTCTACACCAGAGTTTAAGACAATCTTAATATACACTCAATACTAGTCTAAAGTACTGTAACTGTTTCAAGAACTAAAGCACTGGAATTAATTTTCTGCCTGGCTAAAAATTTGATTGTTTTACCAAAAAGAGACAATAACTAAATACAGATGATTCTCTTGGATGATCAGCTGCTttcaaaaagcaattttttgAAATTTCA

Function

GO:

id name namespace
GO:0006067 ethanol metabolic process biological_process
GO:0006070 octanol metabolic process biological_process
GO:0046292 formaldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0018467 formaldehyde dehydrogenase activity molecular_function
GO:0004022 alcohol dehydrogenase (NAD+) activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256041 lncRNA upstream 11669 553764 ~ 554790 (+) False G172784
TU256068 lncRNA upstream 53132 512574 ~ 513327 (+) True G172804
TU256031 lncRNA upstream 113159 441054 ~ 453300 (+) True G172777
TU256008 lncRNA upstream 214921 293647 ~ 351538 (+) True G172755
TU255962 lncRNA upstream 507021 59199 ~ 59438 (+) True G172733
TU256063 lncRNA downstream 94497 669363 ~ 672910 (+) True G172800
TU256042 lncRNA downstream 108849 683715 ~ 687206 (+) False G172784
TU256057 lncRNA downstream 150361 725227 ~ 725907 (+) True G172794
XM_043229494.1 mRNA upstream 17822 547154 ~ 548637 (+) True LOC122332199
XM_043229466.1 mRNA upstream 87592 476421 ~ 478867 (+) True LOC122332165
XM_043229483.1 mRNA upstream 101396 433795 ~ 465063 (+) True LOC122332182
XM_043229484.1 mRNA downstream 83251 658117 ~ 667257 (+) True LOC122332186
XM_043229473.1 mRNA downstream 115749 690615 ~ 698060 (+) True LOC122332170
XM_043229475.1 mRNA downstream 115749 690615 ~ 698060 (+) False LOC122332170
XM_043229476.1 mRNA downstream 119968 694834 ~ 698060 (+) False LOC122332170
XM_043229471.1 mRNA downstream 122003 696869 ~ 718734 (+) False LOC122332167
TU255966 other upstream 84427 465438 ~ 482032 (+) False G172737
TU255972 other upstream 96959 465438 ~ 469500 (+) False G172737
TU255975 other upstream 96959 465438 ~ 469500 (+) True G172737
TU256032 other upstream 110379 446541 ~ 456080 (+) True G172778
TU256247 other downstream 230691 805557 ~ 811855 (+) False LOC122332175

Expression Profile