RNA id: XM_043229500.1


Basic Information

Item Value
RNA id XM_043229500.1
length 3099
RNA type mRNA
GC content 0.47
exon number 16
gene id mark3a
representative False

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 88714 ~ 114288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGCTCGTCAGTATCAGTGTTGGTGGATGGGAGAGTATTGATGAGTTCTTCTCACAGAAAAGACAGGGCTTTTTGGTTCAATGCCATTCAGCTTGCCAACACAAAAATGAGAGGATCGCAATCTAATATGAAGCATCGTGCAACAGTAAGCCATACAACGAATGGCCATGGCCGAGGGGAGGTGACCTCTCGATCTGTGAGGTCGAGTGGTCGAAACCGAAATTCTGGCTCAGGATTAGATGACGTGCACCCTCTTATTGGGAATTACCGACTTTTAAAAACCATTGGAAAGGGCAACTTCGCCAAGGTCAAACTGGCTCGCCATATCCTGACAGGAAGCGAGgtggcaataaaaattattgataaAACCCAGCTAAATCCAACAAGCCTTCAAAAGCTTTCCAGAGAAGTCACAATCATGAAGAATTTAAACCACCCGAATATCGtCAAACTGTTTGAGGTGATCGAGACTGAGAAGACGCTGTTTCTTGTGATGGAATATGCCAGCGGAGGTGAGGTGTTTGACTATCTAGTGGCTCACGGGaggatgaaagagaaagaggccAGAGCTAAATTTAGACAGATCGTGTCAGCTGTGCAGTATTGTcaccaaaaacacattgttcACCGAGATTTGAAGGCTGAAAACCTGCTGCTAGACGCTGATATGAATATTAAGATAGCTGACTTTGGCTTCAGTAACGAGTTCATGGTGGGGAATAAGCTGGACACGTTCTGCGGCAGCCCCCCGTACGCTGCCCCCGAGCTCTTTCAGGGTAAGAAGTACGACGGGCCGGAGGTGGACGTGTGGAGTTTGGGCGTCATACTCTATACGCTGGTCAGCGGCTCCCTGCCCTTCGATGGACAGAATCTCAAGGAACTGCGTGAACGCGTGTTACGTGGTAAATACAGGATCCCTTTTTACATGTCCACGGATTGTGAGAACCTCCTCAAGAGATTCCTGGTCTTGAACCCAGCCAAAAGAGGAACGTTAGAGcAAATCATGAAGGAGCGCTGGATCAATGCTGGCTTTGAGGACGATGAACTCAAACCCTTCCTTGAGCCGGAGGCCGACATCTCGGACCAGAAGAGAATAGATGTAATAGTGGGAATGGGCTTCTCTAGAGAGAAGATCCAAGAGTCTTTGTCCAAAATGAACTATGATGAGATCACAGCCATATACCTACTGCTGGGAAGGAAGACCAACGAGGAGGTCAGTGAATCCAGCTCCAACAGTAATCTCTCCGTGGCGAAGACCAGACCCACCAGTGAGATGAACGGCCAGTCACCATCGCACCTTAAGGTTCAGAGAAGCGTCTCCTCCAGTGACTCCAGAAAATCCCGACGCCACAGTGAACAAGTTGGTGTGGTCGCTAATTCTGCGTTGAGTAACTCCAAGAAGACGGTTCCTGTCACAGCTGACGGGGACGTCAAACAGGAAGGGGGGGTCACAGCACGCAAGCCGCCCACTCACAGCCCTCCCAGTCCACTCCTGGGTAACGCCAACAACcccaacaaaacagaaataccTGACCGCAAGAGAGGAAACTCCATCACACCGAATAATAACTCTGGATCGGGGGGCATGTCGAGGAGAAACACGTACGTGTGCACTGAGAGAAACAACACAGACCGCCTTTCTGTCATTCCTAATGGGAAGGAGAACAGTGTGACGTTGTCTCCTGGCTCTCGGGACCCGGGTGCCTCCACGCACAGCATCAGCACTGCTGCCACACCTGATAAAACGCGTTTCCCACGAGGCTCGGCGAGCCGCAGCACCTTCCACGGACAGCTGAGAGACCGCCGCACGGCCACCTACAACGGCCCCCCCGCCTCCCCAACGCAGCCCCGCAGCCGCGGTAATGCCAACAACCTGCTCACCAAGCTGACCTCCAAACTCACGCGCAGTCGCCATGTATCTGGGGATCAGCAGAAAGATGAAGGGAAAGATGGAAAAGACGGGAAACCCCGCTCTCTCCGTTTCACCTGGAGTATGAACACCACCAGCACCATGGAGCCAGCCGACATCATAAATGAGATCCGCAAAGTCCTGGACGCCAACAGCTGCAGTCACCAGCAGCGTGAACGCTTTCTGCTTCTCTGTGCCCACGGGGACAGCCGCTCCGACAGCCTCGTCCAATGGGAGATGGAGGTTTGCAAACTGCCCCGGCTCTCACTTAATGGTGTCCGTTTTAAAAGGATATCTGGCAACTCCAtcgcttttaaaaacattgcttCCAAAGTTGCAGGCGAACTCAAGCTATGAATATATCTTTAATCTAACTGCATAGAGAAATTTATGGTTCAGTTCAGTATAGGCAAACAGATTAAGCTGTACAATCGAAAAGTAGCAGTTTCcgaatgtttttctttcttttttttttttttttttttttttttaataaaccacttacatgtatttgaaaaaatgtatatattttaacattgctTAAAGCAATAATTTCTTAACATCGTATTATCGTGCAAGTCGTTAAATGCTgtataaagaacctttcagtgttACGATTGTATGATGCTCTGAGGAGATGTTCAGAGAGGAACTCATTGCCATCGCCGTCGTTGCAGACGGATCAGTTGAGGCTGATCATTCAGGAAATGGACGCTAGATGGAGATTTATGGGTTTCGTTTCATCTCTTTAACAGGCGCTATTCTGTGGTGATTTTAAGTATCGCGTGTTTTGGGCAGCTCTTGTGTAAAGGGTTTCGCCTGAATCTTGAGTTGCTTTTTGAAACTTTGCTCTGCTCCTCTATGTATTGAGGATGCTCGTCTGTGAAAGCGGCTGCAGTAAACCTGATTTGAGCTCCGTTTCACTGTTTGAATGTTATTAAGAGCAGCATTTcgatgttttataatttatttcacttttgcccactcagatgttttttttttcgtgtgtaAATAATGTACTTTATGCGGCAAGTACACATTTTCATACTGTTTTGTTGGCGTTTTCTGAAACCAAGAGGGCATCTTGTAATCTTTCACGTATAAGACTCATCACAGATTCCATCAAACTATCTGTAACTCGTCACAGTGTTCATCGCAGAGATCTAATACAGCTACAAAATGATCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255962 lncRNA upstream 31311 59199 ~ 59438 (+) True G172733
TU255950 lncRNA upstream 55418 34860 ~ 35331 (+) True G172723
TU256008 lncRNA downstream 179359 293647 ~ 351538 (+) True G172755
TU256031 lncRNA downstream 326766 441054 ~ 453300 (+) True G172777
TU256068 lncRNA downstream 398286 512574 ~ 513327 (+) True G172804
TU256041 lncRNA downstream 439476 553764 ~ 554790 (+) False G172784
TU256044 lncRNA downstream 439476 553764 ~ 687206 (+) True G172784
XM_043229492.1 mRNA upstream 3522 80925 ~ 87227 (+) True LOC122332195
XM_043229493.1 mRNA upstream 3522 81460 ~ 87227 (+) False LOC122332195
XM_043229497.1 mRNA upstream 42422 43835 ~ 48327 (+) True tnfaip2b
XM_043229488.1 mRNA upstream 65620 13105 ~ 25129 (+) True exoc3l4
XM_043229513.1 mRNA downstream 125060 239348 ~ 244293 (+) True LOC122332217
XM_043229509.1 mRNA downstream 170606 284894 ~ 290231 (+) False LOC122332211
XM_043229508.1 mRNA downstream 170618 284906 ~ 290231 (+) True LOC122332211
XM_043229483.1 mRNA downstream 319507 433795 ~ 465063 (+) True LOC122332182
XM_043229514.1 mRNA downstream 327475 441763 ~ 444452 (+) True LOC122332218
TU256032 other downstream 332253 446541 ~ 456080 (+) True G172778
TU255966 other downstream 351150 465438 ~ 482032 (+) False G172737
TU255972 other downstream 351150 465438 ~ 469500 (+) False G172737
TU255975 other downstream 351150 465438 ~ 469500 (+) True G172737
TU256247 other downstream 691269 805557 ~ 811855 (+) False LOC122332175

Expression Profile