RNA id: XM_043229506.1


Basic Information

Item Value
RNA id XM_043229506.1
length 2104
RNA type mRNA
GC content 0.52
exon number 18
gene id mark3a
representative False

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 88714 ~ 114288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGCTCGTCAGTATCAGTGTTGGTGGATGGGAGAGTATTGATGAGTTCTTCTCACAGAAAAGACAGGGCTTTTTGGTTCAATGCCATTCAGCTTGCCAACACAAAAATGAGAGGATCGCAATCTAATATGAAGCATCGTGCAACAGTAAGCCATACAACGAATGGCCATGGCCGAGGGGAGGTGACCTCTCGATCTGTGAGGTCGAGTGGTCGAAACCGAAATTCTGGCTCAGGATTAGATGACGTGCACCCTCTTATTGGGAATTACCGACTTTTAAAAACCATTGGAAAGGGCAACTTCGCCAAGGTCAAACTGGCTCGCCATATCCTGACAGGAAGCGAGgtggcaataaaaattattgataaAACCCAGCTAAATCCAACAAGCCTTCAAAAGCTTTCCAGAGAAGTCACAATCATGAAGAATTTAAACCACCCGAATATCGtCAAACTGTTTGAGGTGATCGAGACTGAGAAGACGCTGTTTCTTGTGATGGAATATGCCAGCGGAGGTGAGGTGTTTGACTATCTAGTGGCTCACGGGaggatgaaagagaaagaggccAGAGCTAAATTTAGACAGATCGTGTCAGCTGTGCAGTATTGTcaccaaaaacacattgttcACCGAGATTTGAAGGCTGAAAACCTGCTGCTAGACGCTGATATGAATATTAAGATAGCTGACTTTGGCTTCAGTAACGAGTTCATGGTGGGGAATAAGCTGGACACGTTCTGCGGCAGCCCCCCGTACGCTGCCCCCGAGCTCTTTCAGGGTAAGAAGTACGACGGGCCGGAGGTGGACGTGTGGAGTTTGGGCGTCATACTCTATACGCTGGTCAGCGGCTCCCTGCCCTTCGATGGACAGAATCTCAAGGAACTGCGTGAACGCGTGTTACGTGGTAAATACAGGATCCCTTTTTACATGTCCACGGATTGTGAGAACCTCCTCAAGAGATTCCTGGTCTTGAACCCAGCCAAAAGAGGAACGTTAGAGcAAATCATGAAGGAGCGCTGGATCAATGCTGGCTTTGAGGACGATGAACTCAAACCCTTCCTTGAGCCGGAGGCCGACATCTCGGACCAGAAGAGAATAGATGTAATAGTGGGAATGGGCTTCTCTAGAGAGAAGATCCAAGAGTCTTTGTCCAAAATGAACTATGATGAGATCACAGCCATATACCTACTGCTGGGAAGGAAGACCAACGAGGAGGTCAGTGAATCCAGCTCCAACAGTAATCTCTCCGTGGCGAAGACCAGACCCACCAGTGAGATGAACGGCCAGTCACCATCGCACCTTAAGGTTCAGAGAAGCGTCTCCTCCAGTGACTCCAGAAAATCCCGACGCCACAGTGAACAAGTTGGTGTGGTCGCTAATTCTGCGTTGAGTAACTCCAAGAAGACGGTTCCTGTCACAGCTGACGGGGACGTCAAACAGGAAGGGGGGGTCACAGCACGCAAGCCGCCCACTCACAGCCCTCCCAGTCCACTCCTGGGTAACGCCAACAACcccaacaaaacagaaataccTGACCGCAAGAGAGGAAACTCCATCACACCGAATAATAACTCTGGATCGGGGGGCATGTCGAGGAGAAACACGTACGTGTGCACTGAGAGAAACAACACAGACCGCCTTTCTGTCATTCCTAATGGGAAGGAGAACAGTGTGACGTTGTCTCCTGGCTCTCGGGACCCGGGTGCCTCCACGCACAGCATCAGCACTGCTGCCACACCTGATAAAACGCGTTTCCCACGAGGCTCGGCGAGCCGCAGCACCTTCCACGGACAGCTGAGAGACCGCCGCACGGCCACCTACAACGGCCCCCCCGCCTCCCCAACGCAGCCCCGCAGCCGCGGTAATGCCAACAACCTGCTCACCAAGCTGACCTCCAAACTCACGCGCAGAAATATGTCATTCAGGTTTTCCAAAAGGGTCACTCTTGACCCGAGCAAACGGCAGTCTGCCGTCAAATCAGGGCCGGCTGCCCCCTCTGTGCCCCCCACCCTCACAGTCCCCTCCAACCCTGCGGCAAAGACTCTTAATTCAGCATCTCTGGCTATAGGCAGTTGTAGGAATTCGCAGATGAAGAGTGTCTAGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255962 lncRNA upstream 31310 59199 ~ 59438 (+) True G172733
TU255950 lncRNA upstream 55417 34860 ~ 35331 (+) True G172723
TU256008 lncRNA downstream 182165 293647 ~ 351538 (+) True G172755
TU256031 lncRNA downstream 329572 441054 ~ 453300 (+) True G172777
TU256068 lncRNA downstream 401092 512574 ~ 513327 (+) True G172804
TU256041 lncRNA downstream 442282 553764 ~ 554790 (+) False G172784
TU256044 lncRNA downstream 442282 553764 ~ 687206 (+) True G172784
XM_043229492.1 mRNA upstream 3521 80925 ~ 87227 (+) True LOC122332195
XM_043229493.1 mRNA upstream 3521 81460 ~ 87227 (+) False LOC122332195
XM_043229497.1 mRNA upstream 42421 43835 ~ 48327 (+) True tnfaip2b
XM_043229488.1 mRNA upstream 65619 13105 ~ 25129 (+) True exoc3l4
XM_043229513.1 mRNA downstream 127866 239348 ~ 244293 (+) True LOC122332217
XM_043229509.1 mRNA downstream 173412 284894 ~ 290231 (+) False LOC122332211
XM_043229508.1 mRNA downstream 173424 284906 ~ 290231 (+) True LOC122332211
XM_043229483.1 mRNA downstream 322313 433795 ~ 465063 (+) True LOC122332182
XM_043229514.1 mRNA downstream 330281 441763 ~ 444452 (+) True LOC122332218
TU256032 other downstream 335059 446541 ~ 456080 (+) True G172778
TU255966 other downstream 353956 465438 ~ 482032 (+) False G172737
TU255972 other downstream 353956 465438 ~ 469500 (+) False G172737
TU255975 other downstream 353956 465438 ~ 469500 (+) True G172737
TU256247 other downstream 694075 805557 ~ 811855 (+) False LOC122332175

Expression Profile