RNA id: XM_043229517.1


Basic Information

Item Value
RNA id XM_043229517.1
length 1092
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC122332221
representative True

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 446410 ~ 456130 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATGGTATGACGAAGTTTTCCCCTTTTTTCCATACGAACACCTACAGATCTCTGAGAGATGCGGCGCTCTCCAATGAGCACAGGGATCCGTCTGTTTCCTcacttcctctgtctctctcaagGCTCGACTCGAAACTCCTGCGCTCTCGGGCAGCCATCTTGGATCTCGCTTTGAACGAGAGGTAACGGACGCGGCCGCTCGGGTGGAATGGAACCGTCGACAAGCGCGTCCTCCCCGCGGCTCCGACGCCTGTGACCGCTGCCGTTAGCGCTGAATGTACCGGACCCGTCCGTTGAAGGATCGCTCGATGAGCAAACCGTCTTTGGGGGCGATCGCTTGCGGAGGCCCCGTAAAGTGCAGTTTTCGCTGCTCTTAACGCGTTACTTGAACCGGACATCCGAAATATGAAGCAGACGGCGACGCGAGGCCTGGAAGtattatgtttttaacagtGCACAAGTTAGCCGGTCTCGTTAGCTGTTTTGGGATCTGTTAGATGGCTCGCGATCGGTGATCAAACGCGGAATATTTCTCTCCCAAACTTTTAACAAGTTTGCGAGCAGCTTTGCGAGCCAATCAATGATATTGACCGAGCGAGCAATTTGCCAAACGCATATTTCCCCCCTCCGTTGTACCGCGAAACCCGCTGCTTAAAATCGTAATTCCGGGAAAGCAGCTTTCCGTCAACGCCATGTCAACAACAAGAGCCCCGCTTCCCACCGTCAACGAGCGGAAGGCTGAAAATCATACAACGAATGGCCATGGCCGAGGGGAGGTGACCTCTCGATCTGTGAGGTCGAGTGGTCGAAACCGAAATTCTGGCTCAGGATTAGATGACGTGCACCCTCTTATTGGGAATTACCGACTTTTAAAAACCATTGGAAAGGGCAACTTCGCCAAGGTCAAACTGGCTCGCCATATCCTGACAGGAAGCGAGgtggcaataaaaattattgataaAACCCAGCTAAATCCAACAAGCCTTCAAAAGCTTTCCAGAGAAGTCACAATCATGAAGAATTTAAACCACCCGAATATCGGtaagcatgtttataaaaatgtttttttaaattgagaaataaactaaaat

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256008 lncRNA upstream 94872 293647 ~ 351538 (+) True G172755
TU255962 lncRNA upstream 386972 59199 ~ 59438 (+) True G172733
TU255950 lncRNA upstream 411079 34860 ~ 35331 (+) True G172723
TU256068 lncRNA downstream 56444 512574 ~ 513327 (+) True G172804
TU256041 lncRNA downstream 97634 553764 ~ 554790 (+) False G172784
TU256044 lncRNA downstream 97634 553764 ~ 687206 (+) True G172784
TU256063 lncRNA downstream 213233 669363 ~ 672910 (+) True G172800
TU256042 lncRNA downstream 227585 683715 ~ 687206 (+) False G172784
XM_043229514.1 mRNA upstream 1958 441763 ~ 444452 (+) True LOC122332218
XM_043229509.1 mRNA upstream 156179 284894 ~ 290231 (+) False LOC122332211
XM_043229508.1 mRNA upstream 156179 284906 ~ 290231 (+) True LOC122332211
XM_043229513.1 mRNA upstream 202117 239348 ~ 244293 (+) True LOC122332217
XM_043229499.1 mRNA upstream 332122 90749 ~ 114288 (+) False mark3a
XM_043229466.1 mRNA downstream 20291 476421 ~ 478867 (+) True LOC122332165
XM_043229494.1 mRNA downstream 91024 547154 ~ 548637 (+) True LOC122332199
XM_043229495.1 mRNA downstream 110329 566459 ~ 574866 (+) True LOC122332204
XM_043229484.1 mRNA downstream 201987 658117 ~ 667257 (+) True LOC122332186
XM_043229473.1 mRNA downstream 234485 690615 ~ 698060 (+) True LOC122332170
TU255966 other downstream 9308 465438 ~ 482032 (+) False G172737
TU255972 other downstream 9308 465438 ~ 469500 (+) False G172737
TU255975 other downstream 9308 465438 ~ 469500 (+) True G172737
TU256247 other downstream 349427 805557 ~ 811855 (+) False LOC122332175

Expression Profile