RNA id: TU256877


Basic Information

Item Value
RNA id TU256877
length 314
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G173295
representative True

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1495100 ~ 1495413 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttggatgtCTTTCTTATCTCACACTCCTAATTCAATTCCTCAGCTCGGCACTTCAGCGTGTTAGGGCTGCAGCACAGAAAAATGCGAAAagtattgattattattttctaaatgcactGCATTTCCTGTCCCCCGTCTGCCAGGCTTCGCTTTCCCAGAGCTCTGCTGTTATCTTAACCAGAGGAATGTGGGCTCGTACTCTATCAGCTGGTAAACATCACACTGTTTTTAGCTTTGCCTCCTCCTACCCCGTCTCTGTTTGTCTAGGCCGGTCAGACTGACCATGGGGGGTTGTGGCCATCGTTGCAGTTGCG

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05416 Viral myocarditis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256876 lncRNA upstream 147 1494620 ~ 1494953 (+) True G173294
TU256874 lncRNA upstream 3767 1470451 ~ 1491333 (+) False G173292
TU256873 lncRNA upstream 3767 1489167 ~ 1491333 (+) True G173292
TU256826 lncRNA upstream 49105 1443671 ~ 1445995 (+) True G173275
TU256857 lncRNA upstream 227158 1266745 ~ 1267942 (+) True G173282
TU257044 lncRNA downstream 47122 1542535 ~ 1552427 (+) True G173410
TU257098 lncRNA downstream 121275 1616688 ~ 1620421 (+) True si:ch211-214p13.7
TU257107 lncRNA downstream 174139 1669552 ~ 1691907 (+) True G173449
TU257127 lncRNA downstream 238110 1733523 ~ 1734755 (+) True G173465
TU257113 lncRNA downstream 243955 1739368 ~ 1747805 (+) True G173454
XM_043229646.1 mRNA upstream 7466 1446645 ~ 1487634 (+) False LOC122332318
XM_043229645.1 mRNA upstream 8916 1446645 ~ 1486184 (+) True LOC122332318
XM_043229557.1 mRNA upstream 49101 1436228 ~ 1445999 (+) True LOC122332266
XM_043229571.1 mRNA upstream 234935 1206192 ~ 1260165 (+) True fmnl2a
XM_043229586.1 mRNA upstream 290418 1152269 ~ 1204682 (+) False mylka
XM_043229587.1 mRNA downstream 36193 1531606 ~ 1541851 (+) True sik1
XM_043229588.1 mRNA downstream 36193 1531606 ~ 1541851 (+) False sik1
XM_043229627.1 mRNA downstream 94971 1590384 ~ 1594366 (+) True si:ch211-214p13.8
XM_043229638.1 mRNA downstream 121196 1616609 ~ 1620452 (+) False si:ch211-214p13.7
XM_043229637.1 mRNA downstream 121216 1616629 ~ 1620452 (+) False si:ch211-214p13.7
TU256869 other upstream 76190 1415699 ~ 1418910 (+) True G173289
TU256864 other upstream 101926 1374278 ~ 1393174 (+) True G173286
TU256845 other upstream 233643 1199337 ~ 1261457 (+) True G173276
TU256841 other upstream 262632 1206216 ~ 1232468 (+) False G173275
XR_006248471.1 other upstream 660671 809501 ~ 834429 (+) False tlk1a
TU257087 other downstream 96238 1591651 ~ 1598734 (+) False si:ch211-214p13.8
TU257176 other downstream 419385 1914798 ~ 1917331 (+) True G173493
TU257196 other downstream 467798 1963211 ~ 1964710 (+) True G173505

Expression Profile