RNA id: TU257146


Basic Information

Item Value
RNA id TU257146
length 1386
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G173477
representative True

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1835830 ~ 1838337 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaattttattacaatttatagtCAAAATATTTGCTATGGTAATTATCACTAATCATTGCATACACTTTATCATCTACTACAGCAGCATTTTCAAGGCACATTCTAGTAAAGACAATTGATCTTTAATATTCGATGGACAATTTGCTCAAACTTGGCCTGACCAGGCTTGTACAGTTGTTCTGAGGAAATAGGACTaacagatcaaataaaatgttacatagaAGACACCATTATAGACATCAAACTGATACGTTAGACAGTCTcttaatgttaataaatcattataaatactTAAAGAGATCGTTCACCAAAAACGTTTTATTAGATGTTTATCTGGTtacccccagggcatccaagatgtaggagATATGGGTTCTTCAGTAAACACAAaccgttgcagtctgtcagttaTATAACGGAAGTCAACGGGGCCCCAGGCattccaaagaaaaacaaaacatacacagacGAAACCAAATGAAACCCTACTGCTCGTGACCATACATTGAGGATTTAATGCACAAAACCATCGGTctgcacaaaaatacagtatatcttTTTTACCTCTTATACACTAAAATCCTCCGCTTATTCACAACATCCGGCACGTGACACATTTTTAAGTCTTTTGCATGTTACCCATTGACTTTGATTATATGACTGACATACTGTTTCTTCAGTAAACATACTGTgtttactgaagaaacaaactcctctaCATCTTGGATACCCTGAGGATAAGCAGACAGACATccaactttcatttttgggtgaactatccctttaattccgatgcataaatcattataaaatactAACAGTGGCCAGATAGTCACATGCACATCATGGCTGGAATGTGAACATAATAACATAAGGTACCGTGTTAGTTTCTCGATGCAGGACCTGCACTAATGCACTATTGGGAGTACCAGAAATCACAGTATCAATTCTAAGAACATTAGTGCCCGAGTATTGTGATCGTAATCTCTTGCTGTTCAATGACATTCACATCGTCTAGTACAGAGTCTAAGATTAGAGCACTACAGAACGACAGCGTTCAACACTATGACGGGATCCTCAATGTCTGCTTTACTCTGGACCATCCGCAGCTCGAGCTGAGCAGGACTGGGCTTTCGATTGGGACCGGCCGCTTCTGAGATGAGCCAAGGGCAACAAGATACTGAGCTCCCAAAGAAGAGGGCAGGTCTGAGCTGGTGATGACCACCGTGTCTGGACCCATCGAGTGCAGCTGCTTCATCACCTGAAATACACCCAACAGTTTCAGTTTCAAAGTATatgttaacattattattatcatttgtttttattatttaaacttacTTCAACTGCATCTTTTTCTGAACTTATGTGTCTACCAGTGAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257131 lncRNA upstream 58991 1776301 ~ 1776839 (+) True G173468
TU257113 lncRNA upstream 88025 1739368 ~ 1747805 (+) True G173454
TU257127 lncRNA upstream 101075 1733523 ~ 1734755 (+) True G173465
TU257107 lncRNA upstream 143923 1669552 ~ 1691907 (+) True G173449
TU257098 lncRNA upstream 215409 1616688 ~ 1620421 (+) True si:ch211-214p13.7
XM_043229617.1 mRNA upstream 5848 1819876 ~ 1829982 (+) True si:ch211-141e20.2
XM_043229632.1 mRNA upstream 19724 1793955 ~ 1816106 (+) True LOC122332310
XM_043229631.1 mRNA upstream 19724 1812971 ~ 1816106 (+) False LOC122332310
XM_043229634.1 mRNA upstream 19725 1813010 ~ 1816105 (+) False LOC122332310
XM_043229633.1 mRNA upstream 38924 1793870 ~ 1796906 (+) False LOC122332310
XM_043229635.1 mRNA downstream 6472 1844809 ~ 1847284 (+) True fgf9
XM_043229636.1 mRNA downstream 6472 1844809 ~ 1847284 (+) False fgf9
XM_043229639.1 mRNA downstream 11233 1849570 ~ 1861337 (+) True tmprss3a
XM_043229609.1 mRNA downstream 48519 1886856 ~ 1890960 (+) True wdr4
XM_043229615.1 mRNA downstream 86310 1924647 ~ 1933749 (+) True zgc:152951
TU257087 other upstream 237096 1591651 ~ 1598734 (+) False si:ch211-214p13.8
TU256869 other upstream 416920 1415699 ~ 1418910 (+) True G173289
TU256864 other upstream 442656 1374278 ~ 1393174 (+) True G173286
TU256845 other upstream 574373 1199337 ~ 1261457 (+) True G173276
TU257176 other downstream 76461 1914798 ~ 1917331 (+) True G173493
TU257196 other downstream 124874 1963211 ~ 1964710 (+) True G173505

Expression Profile