RNA id: XM_043229609.1


Basic Information

Item Value
RNA id XM_043229609.1
length 1731
RNA type mRNA
GC content 0.50
exon number 11
gene id wdr4
representative True

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1886856 ~ 1890960 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTAGCGAAAGGATGAACAACAGTTGTTTTTGGGGACAGTCTTTATGGCGGTCTCGTGGAGACGGATCCCCGCACGTTTGCGCTCGTGACGCGATAAGCGCGCGACTGTCAGCTCGCACGTGAGCAGCAATCATCATGGCTGTGGTGTGTTCAAAGGCGGACTGGTTTGTTTCGAGCTGTGCTGCTACTTTAGTTGCTGTAAACCTTAAAGAGTCTAGAGAGCCGTTTGTGTTCGACTGTGCCAAAGCTGAGAAGAAACCGAAGGAAGCCGATGGTGATAAAACAAGtgctGGGGACGGATCAGAGGAGAAGGACAGTGGCAGTGACCGGATTCTTGCGTTTGCCGTCTCAGCGTCTGGGAAGCATGCAGCGCTCACCGATGACCACAAACGTCTTGTCCTCTTCCGTACCGAGCCGTCGTGGCAGTGCATCAGTACACGGTGGGTTGTGAGGAGATGCACGTCTCTTGTTTTCACTCAGGCTGAGGATGAAGTCTTTGCGGCTGATAAGTCTGGAGACGTGTATTCGTTCTCTGTTCTGGAGCCAGAAGAACCGGGAGAGCTGAAGCTGGGACATCTCTCCATGCTGTTAGATGTGACTCTTTCTCCTGATGATAAATACATCATTACAGCCGACCGAGATGAGAAGATCAGAGTGAGTTTCCGGCGGTCACCCTACAACATTCAGGCTTTCTGTCTAGAGCACAGAGAGTTTGTCAGTGCATTGCTCGTGCCCGTGGGGCGTCCTGACTGGCTTCTCTCTGGTTCGGGGGATGGCACGATGAAGGTCTGGCATTATGAGAGTGGCCGGCGGTTACACAGTGTTGACCTGAGGCAGTTTACCCTCCACTCTGAAGACACGGACGCAGAAAAGAGGTTTGCTGTCAGCAGGATCCTCAGCTCGCCGGATGGAAAACACATAGCTGTCCAGTGTGAGAGATTCCCCTCAGTTCAGCTGTTCGAGGTGGATTCTGGGCCCGAGGGCTGTCTGAGCCCCTCCGAGGCTCTCGTTCTTCCTCATGCTCCCTGGGACATGACCTTTGATTCACAGAGTCAGCTGTGGGTCTTACTGGAGACTGAAGACGTGAACGTGCTCCTGTACAGGTACTCGGAGCAGCACTGGCAGCCGCGTGACTCGGAGACTCCTGAACTGAGGAGGGTCTCCGAAGCATTGCGAGCTCGGTGGGATATCTTTAAAGGATCCGTGGGACTGGAGAGTCCATTCAAACACTTGTATAAAGTGAACTTCGACAACATGGCGTCGTACTTGCAGAAGAAACAGGAAAGACTAGATCAAGAGAGTAAGAAGAGAGCAGCAGCGAACGGCTCGAAGTCCAGCAAGAGAAGCAGAAGCGAGAGCGGCGCTGTGCCTCAGAGCACCAGCTGAGAGatgcttttttgtcttttttctcttttgttaatCGACAATAATTAtgactatttttattacttcagTAAAGCTCCACTTGGTTTATTTTGTGAACAGCAAGGCGCTGTAGCTTGGTTTGGCCACTAGAGGCCGCTACAGGAACACATCCTGGTACGATGTCATTAGACGACGGGAATgaacatgttttattacatCAGTGCTTAAAACATGAGATCTGTGGCTTCAGTTGTTCTTAAAgttagacttttatttttctgagtAAAAGTGACTAAAAATCTGTACATCCTGTATAATGTTTATACTTttacaaaaccaaataaaaacaacaccaaTGGTTCATA

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0005634 nucleus cellular_component
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity molecular_function

KEGG:

id description
K15443 TRM82, WDR4; tRNA (guanine-N(7)-)-methyltransferase subunit TRM82

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257146 lncRNA upstream 48519 1835830 ~ 1838337 (+) True G173477
TU257131 lncRNA upstream 110017 1776301 ~ 1776839 (+) True G173468
TU257113 lncRNA upstream 139051 1739368 ~ 1747805 (+) True G173454
TU257127 lncRNA upstream 152101 1733523 ~ 1734755 (+) True G173465
TU257107 lncRNA upstream 194949 1669552 ~ 1691907 (+) True G173449
XM_043229639.1 mRNA upstream 25519 1849570 ~ 1861337 (+) True tmprss3a
XM_043229635.1 mRNA upstream 39572 1844809 ~ 1847284 (+) True fgf9
XM_043229636.1 mRNA upstream 39572 1844809 ~ 1847284 (+) False fgf9
XM_043229617.1 mRNA upstream 56874 1819876 ~ 1829982 (+) True si:ch211-141e20.2
XM_043229631.1 mRNA upstream 70750 1812971 ~ 1816106 (+) False LOC122332310
XM_043229615.1 mRNA downstream 33687 1924647 ~ 1933749 (+) True zgc:152951
XM_043229614.1 mRNA downstream 33687 1924647 ~ 1933749 (+) False zgc:152951
XM_043229616.1 mRNA downstream 33687 1924647 ~ 1933749 (+) False zgc:152951
XM_043229560.1 mRNA downstream 103934 1994894 ~ 1999995 (+) True LOC122332269
TU257087 other upstream 288122 1591651 ~ 1598734 (+) False si:ch211-214p13.8
TU256869 other upstream 467946 1415699 ~ 1418910 (+) True G173289
TU256864 other upstream 493682 1374278 ~ 1393174 (+) True G173286
TU256845 other upstream 625399 1199337 ~ 1261457 (+) True G173276
TU257176 other downstream 23838 1914798 ~ 1917331 (+) True G173493
TU257196 other downstream 72251 1963211 ~ 1964710 (+) True G173505

Expression Profile