RNA id: TCONS_00002808


Basic Information

Item Value
RNA id TCONS_00002808
length 237
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id XLOC_000044
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2023409 ~ 2023645 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcaaaaatgaaaattcagtcatcatttattcaccttttACTCGTTTTAACCTTTTCtcacgagtttctttcttctgctaaacactaaagaagatattttaaatataatataaagaagaaaaatgttggaaccctaaaaccattgacttccacagtatttgttttattatagaagtcaatggttgcaggttttcagaaAAAACAAATCTTTGGCGTATAAGAAACTTAGAAATGTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003015 lncRNA upstream 17777 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00000077 lncRNA upstream 123566 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000073 lncRNA upstream 230886 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000071 lncRNA upstream 291925 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000065 lncRNA upstream 317529 1705130 ~ 1705880 (+) True XLOC_000035
TCONS_00000101 lncRNA downstream 272946 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00003016 lncRNA downstream 1695021 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000113 lncRNA downstream 2574415 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00002809 lncRNA downstream 2877815 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00003018 lncRNA downstream 3287834 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00000080 mRNA upstream 23052 1941031 ~ 2000357 (+) True XLOC_000042
TCONS_00000079 mRNA upstream 100156 1915967 ~ 1923253 (+) True XLOC_000041
TCONS_00000078 mRNA upstream 112028 1904419 ~ 1911381 (+) True XLOC_000040
TCONS_00000076 mRNA upstream 123561 1896737 ~ 1899848 (+) False XLOC_000039
TCONS_00000075 mRNA upstream 173305 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000081 mRNA downstream 1440 2025085 ~ 2027100 (+) True XLOC_000045
TCONS_00000082 mRNA downstream 77896 2101541 ~ 2129631 (+) False XLOC_000046
TCONS_00000086 mRNA downstream 77896 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000085 mRNA downstream 77896 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000084 mRNA downstream 77896 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000069 other upstream 230038 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other upstream 291083 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 300252 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000067 other upstream 304882 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000061 other upstream 447846 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000094 other downstream 167055 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000098 other downstream 248616 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other downstream 251960 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000100 other downstream 263204 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000102 other downstream 278313 2301958 ~ 2302623 (+) False XLOC_000050