RNA id: TCONS_00011105


Basic Information

Item Value
RNA id TCONS_00011105
length 824
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_005224
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13102866 ~ 13106223 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAGATacttttacaaatttttatttatttttgttatttgcatGTGCTCTGCAAcagtgaaaatatatttatatgacaTTGGGTCgcacaattacagaaataaaacaaaatcaaaccacAATGATAACTTTACATAAGCTTACATTTCAAATGAACATTAAAGGACCAAAATTAACACTCAAATTCTTTCTATGAAAGACACAGCTAAATTTATAAcgaaacatgtttttttatacaTCTCAAATTAAACCCAACACCTTTAAGTGCAACTGTAGAATTACATCAACCCCAACAGCTCGCTCTGAAGACCTGCAGGCCACAAATCCAACATGATCAGCTTTTTCTGATGCGACGCGCTTCATGAGGCATAATACGGTCATGATTAATGACTGAATATCAGCCAACTTTATATACCAACCCATTGATAAATCATGTCAAACAGCGCTAATCTGACCTTGACAGAAGAACGGATCGAAAAATGGATGttgaaaaatatagaaaataaatgttGATAGAAAAATAGAAATGTAGATAAATGTTGGATATTCAGTCCCAAAATCCAATTCAATTCATGCTCGGCGTCGTCCTGTGCTTCAGGGTCAATGCAGAAACAGGTCATCGGGTCTGTGCTCATTCATGAAGCTACAGCCAAATATCCTGTAGCTGATCTGCAgtttgaatTCCATGTTGTTTTTTAGTTGGTGCACAGTCCGCTTGTCCAGATATCGACAGAAGAGTGTTAGCAGGTTGGAAGGCAAAAGCAGTGGCTCAACGAGTGATGTCTGGGACAGCTGCCTGGCCACATGGAAAACCGTGTCCGTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011104 lncRNA downstream 1453176 11647192 ~ 11649690 (-) True XLOC_005220
TCONS_00010801 lncRNA downstream 2329920 10769131 ~ 10772946 (-) True XLOC_005214
TCONS_00010042 lncRNA downstream 2632461 10465625 ~ 10470405 (-) True XLOC_005209
TCONS_00010040 lncRNA downstream 2661253 10434456 ~ 10441613 (-) True XLOC_005208
TCONS_00010030 lncRNA downstream 2882747 10215330 ~ 10220119 (-) True XLOC_005201
TCONS_00010071 lncRNA upstream 227309 13333532 ~ 13336953 (-) True XLOC_005228
TCONS_00010085 lncRNA upstream 930209 14036432 ~ 14050489 (-) True XLOC_005236
TCONS_00010086 lncRNA upstream 1032063 14138286 ~ 14144159 (-) True XLOC_005237
TCONS_00011106 lncRNA upstream 1733564 14839787 ~ 14840559 (-) True XLOC_005240
TCONS_00010803 lncRNA upstream 2011664 15117887 ~ 15120113 (-) False XLOC_005243
TCONS_00010061 mRNA downstream 21637 12954938 ~ 13081229 (-) False XLOC_005223
TCONS_00010062 mRNA downstream 21637 12971203 ~ 13081229 (-) True XLOC_005223
TCONS_00010059 mRNA downstream 1333977 11768114 ~ 11768889 (-) True XLOC_005221
TCONS_00010058 mRNA downstream 1453176 11601559 ~ 11649690 (-) False XLOC_005220
TCONS_00010055 mRNA downstream 1509430 11496740 ~ 11593436 (-) False XLOC_005219
TCONS_00010063 mRNA upstream 46961 13153184 ~ 13155653 (-) True XLOC_005225
TCONS_00010064 mRNA upstream 82393 13188616 ~ 13205854 (-) False XLOC_005226
TCONS_00010065 mRNA upstream 91947 13198170 ~ 13205572 (-) True XLOC_005226
TCONS_00010066 mRNA upstream 205716 13311939 ~ 13318969 (-) False XLOC_005227
TCONS_00010067 mRNA upstream 205877 13312100 ~ 13318944 (-) True XLOC_005227
TCONS_00010060 other downstream 767535 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010022 other downstream 3431729 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010021 other downstream 3454521 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010015 other downstream 3585885 9510580 ~ 9516981 (-) False XLOC_005191
TCONS_00010016 other downstream 3585913 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010077 other upstream 497516 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010097 other upstream 2475097 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010103 other upstream 3302085 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010104 other upstream 3309587 16415810 ~ 16434838 (-) False XLOC_005253
TCONS_00010105 other upstream 3325593 16431816 ~ 16434835 (-) True XLOC_005253

Expression Profile

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