Fish Transcriptome and Expression Database

RNA id: XM_043230373.1

Basic Information

Item	Value
RNA id	XM_043230373.1
length	3106
RNA type	mRNA
GC content	0.45
exon number	15
gene id	LOC122332905
representative	False

Chromosome Information

Item	Value
chromosome id	NW_025047825.1
NCBI id	JAEQBD010000170.1
chromosome length	69096
location	43703 ~ 50163 (+)
genome version	ASM1883169v1_2021_tiger_barb_Genome
species	tiger barb (Puntius tetrazona)

Sequence

gagagagagagagagagagagagagagagagagagagagagagagagagagagaatgtttaTGTCGCTGTGAATCTCTGCTAATATTAATGCGCATGTCTCATGGTTTATGAACGCGTCActcagatggatggatgaacttCTGTCACCATTAGCAGCGTCTTCGGGCAGAAGAACACATGGTCATGATGAGGATGGTGGTGCTATCACTCTCTGTAATGATGGTCTATGTGCTCCTGATGGATGCTACGGTGGAAAGCGCTGCAGAATTTGATCCATATAAAGTTCTTGGAGTCACCAGAAGCGCAAGCCAAGCAGAAATCAAGAAAGTGTACAAACGCCTGGCCAAGGAATGGCAtcctgataaaaacaaaaatcctgaAGCAGAAGACATGTTCATCAAGATTACAAAGTCATATGAGATCTTAACAAACGAGGAGAAGAGAGCCAGCTACGATCGTTATGGACAAACAGATAACACTCACCCGTATGGACGCGCCCATCATGCTTTCCGCCATTTTCATGACAACTTCTACTTTGACGAGTCTTTCTTCCACTTTCCCTTCAACAATAAGGGTGGCCGGGACTTTGCTGACAACAAATACACGTTGCATTTCAACCAGTATGTCAATGAAGTTGTGCCTGACAGCTTCAAGAGGCCTTACTTGATCAAAATCACCTCAGACTGGTGCTTCAGCTGCATCCATATCGAGCCAGTTTGGAAAGAAACAGTGCAGGAACTGGAAACGCTAGGGATTGGAATCGGTGTGGTTGATGTTGGCTATGAGCGGCGTTTAGCAAATCATTTGGGAGCACATCAGACTCCATCTATTCTTGGTGTCGTCAATGGAAAAGTGGCTTTCTTCCATTACGCTGTTGTTAAAGGCCACCTGATGCAGTTTGTAGAAGATTTGCTGCCACAGAGACTAGTTGAAAAGGTCACAGACAAAAACAACCAAGAGTTTCTGAAGAGCTGGCATGAGCTGAACAAGCCCCATGTTCTCCTGTTTGACCAAGTGCCTTCGGTTCCCTTGCTTTATAAGcTTACAGCGTTTGCCTATAAGGACTATGTGCAGTTTGGATATGTGGATCAAGGTCTTTCTGAGACCGCTGACCTGCTGAGAAAATTCAACATAAACACTTATGCGCCAACCATGCTTGTCTTCAAAGAGGATGTTGAGAAGCCTGCAGATATTATACAGGCTAAAGGGATGAAGAAGCAGATAATAGACGAGTTCATCTCCAACAACAAGTTCCTCCTGGCCCCTCGTCTGGTGAACCAGAAGCTATTTGATGAGCTTTGTCCAGTCAAACAGTTCCATCGTCGCAGGAAATATTGCGTTCTACTCATCACTGGTGAGGAAGAGTCCTTTGCCACAGGAAATGAAGCCTTCCTCTCGCTAGCCTCTGCAAACACCAATGATGTGCTGCGGTTTGCTTATGTCTACCAGCGACGTCAGCAGCCCCTATGTGATGCTCTCTTGAAAAACAAAGACAGCACACCACCACAGGTGGTGATTCTGGAAAGGCGTAACGGAGCTGGCAAGATTCTGTATAAGCCAATTTTGGGAGGATGGAACGGCAGTAAGGAAGACAAACAAAAGCTCTTGGAGGAACTCGAAAGACTGCAGAAGGATCCCTCCATCCTCAACAATGATGCCGTTCTCCCAGAGCTCAACAATGAGTTCACCTCCATGTTTTTAATAAGATGGATTTACACGGCATATGACTACTTGTCTGAAATTATTGATGATCTTCTTCACAATAACTGGCGTGAGATGATGCCCCTCCTGTCTTTGATATTCtctgcactttttattttatttggcacTGTGGTTATTCAGGCTTTCAGTGACTCAAGTGAGGAAAAACAGCCCAAAACGAAAGCAAAAGAGGTTTCCAAGGCCGAGAACGGTTCCCCAAACACCTCCAGCGCATCCAGtcGTCCACCAAAGAAAAACTTTGTGGAGGTGACAGAGTTAACCGACATTACATACACTAGTAACCTGGTTAAGTTGAGGCCGGGTCACATTAATGTAGTTCTGGTACTTACTGATTCTACAAAAAACATCCTGCTCAGCAAATTTGCCAAGGAAGTTTATTCGTTCACAGGGAGTTTGACCCTACACTTCTCCTTCCTAAATGTGGATAAACACAGCGAATGGATGTCGGCCGTTTTGGAATACGCCCAGGACGCCATGCAAATAGACACAGATGAGGACGAAGTGGGCAGCCGCAAATTAGACTACACAGGCTATGTTCTAGCCCTCAATGGCCATAAGAAATACCTCTGTCTTTTCAAGCCAGTCTACACAGGTGAAGACTTGGATAGCAAGCCGGAGGAGGAAGGAGGAGTTTCACGCTCCAGGAAGGGCATGACACGCTCTCGATCCACAACTCTTCAGATCCACCACAAACTGGATCGACTCGGACTCTGGATGGAGCGACTGATGGAAGGGACTCTGCCCCGGTACTACGTCCCAGCCTGGCCCGGTCTGGACAAGATCACAGTCAACAAATAAAGCCTCGTTGAAGCTAGCATGCTTTTGCTAGAGCTGATAACCCAGCTGAATTAGAAGCACCCGATGGCCTCAGCGAAACCGGGCTTGAAGCTGCTCAGAGCTGGATGCTTGTGAGACTATTCTACGTGAGTGGCTTTAGTTTAGCATTGTTGAGGAAACGAAAATGTACTTGAATCGACACTGTTGCTGACCTCGTGCAGATCTTTAATTTAGCTGCTCTAACGGAGGGCTTGGATATATCAAAAGGCTGTTGGTGGAGAGCCAAAATATCAACAGCCTAGCCTAGCTTTTGATTTTAAACACTTCCGTTACACAAATAACACTGCAACATGCTGCTAGCTGGAAAAACAGCTAACATAATGTAGCATAACATAACTATCACTGTAGACTTTTTAGTCCTAACTATGTTTACTCATGACAATGCTGTGAATTTTTACGTTTGACAATTTTAAGAGAcactttcctttttaatttaacgCCCTTAATCTACAAAGTGCAATATTTCGCTTTTTGCTAACAATTGACAATAAGGTTCTATATGTTAACTTCAGTTAATGCAGcgaatttaatgaaataacaatGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
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A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU261990	lncRNA	downstream	214	50377 ~ 51117 (+)	False	G176653
TU261989	lncRNA	downstream	368	50531 ~ 51481 (+)	True	G176653
TU261991	lncRNA	downstream	368	50531 ~ 51117 (+)	False	G176653
TU261988	lncRNA	downstream	6199	56362 ~ 58548 (+)	True	G176652
XM_043230375.1	mRNA	upstream	3477	35761 ~ 40226 (+)	True	LOC122332907
XM_043230374.1	mRNA	upstream	7964	33397 ~ 35739 (+)	True	LOC122332906
XM_043230371.1	mRNA	upstream	10840	30868 ~ 32863 (+)	True	LOC122332904

gene	XLOC_000007 f7
RNA	TCONS_00000019
bioproject	PRJEB12982

ornamental fish

Basic

Function

Jbrowse2

Neighbor

Expression

RNA id: XM_043230373.1

Basic Information

Chromosome Information

Sequence

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

Expression Profile

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