RNA id: XM_043230375.1


Basic Information

Item Value
RNA id XM_043230375.1
length 2156
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC122332907
representative True

Chromosome Information

Item Value
chromosome id NW_025047825.1
NCBI id JAEQBD010000170.1
chromosome length 69096
location 35761 ~ 40226 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgttcaatacatttttcttttgcacttcGTGATCTCAGAGCAATACACCTTTCTTGAGTTAAGTctatgtatattaaaaagatgttttaatgattaatcCGTTTGATTGCATCTGCCAGTTTTAGTTCTTTGACCCATTATCTACAGTCTTAAAAGCTTGGAGTTATATGGAGGCTAAAGGCACCAAAACAAACTGGTGAATGCCACACCTCTCTTGATCTTGACATGCACAAACTCTTAGTTATAGTTATAAAACGAACGTTTactattttgatttttttcgaAGTTTCTACGAGACGAAGCTGTCACTTGACACAGCAAAACAGATTCCAGGTAGCAGTCCTTATTATAAGTATTCGGATAAGTTGCAAGCAAAGGGATATGGATAATATCGGCGCATGCCTCCCGGTTAAGGCGTGGTGCTCAAACATCTCACCTTAGACTCATTACATCAGAAGAGTAAGCAAACCTCTTCCAGCAGGTGAGGCCGGATTCTTTGTGGGATGTGTGGGCTACTCTTTATTGTGTCGATAAATAAAACGCTTTCATTCCATAAAGTTACAACCTATTTGAAATTATGAGTCTGTACGAAAACTGTATGAGTAGCAATCAgtgaaaaaaaccaaacatgTACAGTAACAAGTGCTCGTGCAGATATAACAGCAACAGCTTGAAGCTTGAAAACGGCTTTAGGAAATATGCTATACACTTGGAAAAAGTGgtcatataatatatgtatgtgtatgttatGTTCATAACTGGCCAATCGTCTCGCCTTTTGCTGTAGGCGTGCGCTACTACACTTCTTAATTTGGCAGGTTTCCTTCATAAACGAAAGCGTGGACGTAAGGACGATTCAAGATGAAGGTGCTGCAtctcttattatttttgtacgCGGTGTCTAATACGACATTAGCGTCAGACGACTGTGCCGTCTGCGTCGGCGTGAGTTTGGGGATGGTTGCGTTAATAACTCCTTTCTTAATAATTGCTATGGATCCTTTGCTGCCTTTTGATTCTAAGCGTTTGAAGGCGGATTTAAGAGACTCTCTCTTCGGGCAGCATATCGCGACTGATGTCGTGCTGAAAGCTGTATCGACATTCATGACTGACAAAAACCCGAACAAACCTCTGGTCCTCTCTTTTCACGGAACTACAGGAACTGGAAAAAACCACGTTGCTGAAATCATCGcaagaaacatttacaaacaagGATACCGGTGTGGGCatgttcacatatatatatctgagCATCACTTCCCTcacaaagaacacacacatatctacAGCGCAAATCTAAAGAAATCGATTCCTCAAGCGGTATATTGGTTTCCCCGCTCCATGTTCATATTCGATGAAGCGGACAAGATGGATCCACAGCTGATTGATGCCATAAAACCTTTTCTGGACTACAATGCCCGCGTAGATGGAGTGTCATTCAACAAAGcgattttcatttttctcagTAATGCAGGTGGGAATGTGATTGCTGACGTGGCTCTGGATTTCTGGAGAGAAGGAAAAGATAGGAAAGAAATCAGGATGAACAGCAAGGAGCTGGAGTTCAAGATctctaaaaacatcaaaaacgaGAAAAGTGGATTTTTACACTCTAGACTAATAAAGCATCATCTGGTCGATCACTATATTCCTTTCCTTCCTCTGGAGCTGATGCACGTGCGTCAGTGTGTCTTGGCTGAGATGCTACGTCTGAACATGACTCAAGACGTGGACCTGGCAGATAAAGTGGCCAGAGACATGCCTTACTACCCCGAAGAAGAGAGAATATTTGCTGTTAAAGGCTGCAAGTCTGTCAGACAGAAGCTGTTCCTCTATAACGATGACTGAACAACTATAGCAGTACTTGCGGTTCACTATTTTACTGTCTGTTTGCGGCTTTTACTATTTcggtttttctttttattcaaatcattaGCAAAACAAACCCGTCACCTGGATTTAAGGTTTCAGGCGGCAGGTCTTTGGATAAATTAAGGTGCATTGCAAAGACAGAAATATGTGGATGGACATGGTTTTGTGCTCGTCAgacttcattttttaaacaccttataaaaaaaaaaacatacctttGTCGCTTCTTTTTTCTATTGCCTCTTACAACAGCTGAGGCAGGATTCTTTCactttattaatatg

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K22990 TOR1; torsin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261990 lncRNA downstream 10151 50377 ~ 51117 (+) False G176653
TU261989 lncRNA downstream 10305 50531 ~ 51481 (+) True G176653
TU261991 lncRNA downstream 10305 50531 ~ 51117 (+) False G176653
TU261988 lncRNA downstream 16136 56362 ~ 58548 (+) True G176652
XM_043230374.1 mRNA upstream 22 33397 ~ 35739 (+) True LOC122332906
XM_043230371.1 mRNA upstream 2898 30868 ~ 32863 (+) True LOC122332904
XM_043230372.1 mRNA downstream 3477 43703 ~ 50163 (+) True LOC122332905
XM_043230373.1 mRNA downstream 3477 43703 ~ 50163 (+) False LOC122332905

Expression Profile