RNA id: TU264903


Basic Information

Item Value
RNA id TU264903
length 1449
RNA type TUCP
GC content 0.50
exon number 6
gene id LOC122333210
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 524311 ~ 538878 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgagtcagtcagtgtgtgtgaagctCAGGGAAGAGCAGCATCAgtttctctctccatcttttttcttaaatgtttttgccTTCTGTTTTTGCGGCTCATAACAAACATCCCAGTTCATTCAAACAGAAGACGCGGGAAGAGTTTCGCGGCATAATCTCGGCCGTTCATTCCCGGGACGGTTAGTGACGGTTAGGCGCTCAGCTCGCGCGCGGATCAGAAGCATGTGAAGCACCGCTGGCCGAACCGAACCGAACCGAACCGAACGGAAGCGGAAGCCCAGACTCCCGCCGGGGTGATCGCGCGCGGATCGGATGGATTGACGAGGAGCGGCTCAGgatcAGCATGAGGGATCTTCAGAGAGTTCTCACTCAGGTCCTGCTGCTGGTTCTTCTCCTGGTTCTCCTGGGATCTGCAGCACAATCCAGAGAACATCAGGCGGTGCGGACGGGGACGTGCGAGGTGGTGGCGTTACACCGGTGCTGTAATAAGAACAAGATCGAGGAGCGCTCGCAGACCGTCAAGTGCTCGTGTTTCCCGGGACAAGTAGCAGGAACCACCAGAGCCGCTCCGTCCTGCGTCGACGcctCTATAGTCCAGCAGAAGTGGTGGTGTCAGATGCATCCGTGTCTGGACGGAGAGGACTGTAAAGTGCTGCCGGATCTGAAAGGATGGAGCTGCGCTACGGGGAATAAGATCAAGACCACAAAGATCTCCTCAGACCGGGATCAGCTCTGGTAACCGCTGGAAACCTGATACAGACGCTCATCTGTTGTGTCTCGAGGATTCGTTCAGAGGCTCGGTGGACTCTCAGCGCTGGTTTGTGACGTGAATCATGAATCATGAATCATGAATCAGCGGCTCTTCTCGTTATTAACCGTGACTGAGCTGATGGATCAGGATCCAGACCGATGAAGGTCACGGAGTCCCGCCAAACCATCCACTTCATCAGTATCCAGATAAATAATGGATGAACAGTTTGTTCCCGCGCTTCTTGAAGTTCTAATATGAATGTTTATATATCCTCATATCAAAGAAGACTCCAGCAGATGCTTTATCTGTGTGTAAATGATACAGAGGCTTATAATAAACCATGATTGTCTTAATCTGGTGCGTCTCAGGGCTTCTTCTGTGTCCAGGTGTTTTCCAGGTGAGGTGGGCGGAGCTTCATGACCCTCAGGTGACCCTCGGCCGCTCACACAAACTCATGTTGAATCGCTCGAATGATTCATTTGGACAGTAACAGTAACAAACAGCACCGATGCtccttttatttctgaaatgttttatttggatgttcacttaaatgtttttcaatgtTACTACTCTGGAGAAGAATAACATTTGGCAACATTATTAAATGGAGCGTTTCGACGTGTGATCAGAGAATCGGTGAATCGCTGGACAGAGCATGGGTGTccagaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264891 lncRNA upstream 18774 503211 ~ 505537 (+) True G178557
TU264878 lncRNA upstream 66631 447009 ~ 457680 (+) False G178550
TU264875 lncRNA upstream 66631 456433 ~ 457680 (+) True G178550
TU264873 lncRNA upstream 91975 430013 ~ 432336 (+) True G178549
TU264857 lncRNA upstream 114499 406511 ~ 409812 (+) True G178537
XR_006248600.1 lncRNA downstream 14249 553127 ~ 554783 (+) False LOC122333249
TU264904 lncRNA downstream 15136 554014 ~ 558473 (+) True LOC122333249
TU264928 lncRNA downstream 98800 637678 ~ 638126 (+) True G178577
TU264949 lncRNA downstream 148560 687438 ~ 755183 (+) True G178589
TU264957 lncRNA downstream 148560 687438 ~ 756101 (+) False G178589
XM_043230721.1 mRNA upstream 1771 507402 ~ 522540 (+) True etv6
XM_043230724.1 mRNA upstream 44918 469095 ~ 479393 (+) True LOC122333209
XM_043230690.1 mRNA upstream 75330 432973 ~ 448981 (+) True rerg
XM_043230712.1 mRNA upstream 127527 390952 ~ 396784 (+) False naga
XM_043230714.1 mRNA upstream 127527 390959 ~ 396784 (+) True naga
XM_043230815.1 mRNA downstream 40914 579792 ~ 599671 (+) True lrig3
XM_043230796.1 mRNA downstream 74464 613342 ~ 616781 (+) True echdc3
XM_043230748.1 mRNA downstream 84559 623437 ~ 631571 (+) True rtcb
XM_043230694.1 mRNA downstream 236498 775376 ~ 778054 (+) False crebl2
XM_043230693.1 mRNA downstream 236513 775391 ~ 778054 (+) False crebl2
TU264861 other upstream 67957 451126 ~ 456354 (+) True G178541
TU264814 other upstream 257583 264517 ~ 266728 (+) True G178503
TU264693 other upstream 310036 116245 ~ 214275 (+) True cunh11orf98
TU264696 other upstream 371096 150521 ~ 153215 (+) True dynlt1b
TU264685 other upstream 403700 116245 ~ 120611 (+) False cunh11orf98
TU264989 other downstream 236534 775412 ~ 778365 (+) True crebl2
TU264990 other downstream 236534 775412 ~ 778365 (+) False crebl2
unassigned_transcript_2688 other downstream 261056 799934 ~ 800005 (+) True trnam-cau_120
TU264969 other downstream 297472 836350 ~ 838553 (+) True G178593

Expression Profile