RNA id: TU264904


Basic Information

Item Value
RNA id TU264904
length 3557
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC122333249
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 553127 ~ 558473 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATACAAACCAGTAACATTGCTTTTAACAAACACTTcaggtgacctttgacccctgaTGCCTATATTTTATAGCAAACACAATCTGTTGACTGTGTTCTTTAGGCTAGTGTGTCGCTATGAATCGATCACAGATCTGATGATTTCATCATAACAGTGTGTTATAACTCTGTTTTAACCCTCTGGTCATTCAGTCACACTGAAAGGTAAAtgctcttttttcattttttaaatcttctaTTTTTATCACAGCGGTATGAAACCTTTGTGGCACTTGCTCTatgaacacaaacacgcatacaTTTTAATCTCAACGCCAACAAAATTCTTGCAGTTCGGTCATGAAGTCTGCTAATCTAAATGCAAAACCTGTTCAAACACACAATAGCTACTATGATtcgctttatttataaataatggcgttttgtaatatttgtgctgctttaattatttgttaGACGTAAGTGCCGCACTATCCCCTTAAAATACAACATACTAATGGAATAAAATCTTTATTAGTTTGATGTGGTTGAGAGAATGAGAGACAAGTCGGTGTGATTTACATCCTTTCACTTGTGTTACAGATCTCGAGGCGTCTTCCTAACGTTGTGgtttaattgtaaaatgtcattgcatCCAGGATTACGACCCAAAGAAGTGAACACACAATGATTCATCAGCAGCGGCGTGACGCTAAAGATCAAGTTAAACGCCGTACATTTGCTGAACgtgacaaatacaaaaaaaagcaaacaatatGGCCgctaataataatcataacagCATGTGTGTGAATCAAGAGTGTGTTTTTAGTGGCAGTTTGCTTCAGCATCTCCTGACAAACATGAcctcaaatgttaaaaaaaaatgatacaaaacataaccatcacattaaataaaatcattagtGTTGTTAGTTATTTACATGCTATAACTAGCACAACATCTTCATTCCAGTGTTATAATGCTTCTGTTCTACAGGAAAGATCATCATTTAATGACAGGAATAGCTCTGGTGCtcttaaaaacatgaatgaacgtgtgtgtgtgtatgcgttcATACTCAACACGGGCTTCGAGGAAAAGAGACGCTAACGCAGCACTACaagatataaaacaaaaccatcCTAGAAGTAGAATTTAAGATGCATTTCTATGGAAGCCTGCTTGCGTCAcggaataaaaacataaaaaaatgtcattttgactttttatctcacaattttgacttgAATTAAGAGACAACTTCATGTATGAGATCAACTCAAGATGCACTCTCTTCATATGAATGTAAACAGTGATATTTAAACTCAGAACTGAGATATAAACTTGGCTTGCTAGATTAAACTCAAAATGATGATGTTTTACGAGAGATTTAAGCTCAGAGTCACGATGCAAACtctttgtgaaatataaacctAAATCACGAGATGGTTATATCTCAGATTTGAGGCAGAAGCACAGTTTAATTGGGTAACTTTATTTTGACGGTCCCTTTTGAGCGTTGTGTTGAGAATAATAGCGCTTCCTTACAGTCAGctgtcattagagtattaatagAGTGATTCATGTCTGTGACAGTCtcccaaaaaacatttactgactACAAGTAACTTCACAAGTAGATCTCCCGAACCTCCAAGGagttaaagggaccatcaaaataaagtgaaaccttTCATTTGAATCATGAGATTAAAGCTCATTTTTAACGCTCTTTATCACTCTGTATTCTACGTTTATACGTCGtaactgtaaaagaaaagtCTAAATAGTAAGATAAAAAGtttagtcatttattcattttttaatttagtgctgGAAACGGGCCACATACAGTGTGTCTGATAGATGGTTTAGCCTCTGTCCAACCGATTAGTAAATGTACATCagcaaatacattaaatatagcaTTATATACACAGTTAGGATAGTAGATGCTAACGTTATGTTTAAGGCAATACGTCATGAGTAGGAGAGCGTCGATCGCTCAGGAGTCACGTCAAACTCAAATAccctgtgtaaaaaaataacccCGATAACGGAACTAAGGGAGCGCTTGCCCTGAGGACGTCTGCTGGAAATCATATTGCTCGAAGCGTTAGATTTGGTAATGATCCTCAGAAGTCATTTTGGTCAGGAACGGATTCGTAAGGCCCGAAAACATCAGAAACACACGCGGGTTTACATTCAGATCCGTCAGATAGCAGGCGCCGGCAGCGTAACGTGTGAAACACACTCGAATGAGCTGGACGTCTGCCGTTTGGCTGCAAGATACGGATGCTTGCTGAACCTGAGCCACGAGACATGACCGAAACCAAGCTATAAAGGCCGTCTATATATCAAAGTGCGCGTTTATTAGGGCTGCGAAGATAAATCCGTGCAGGATCGATCGTGGATGGATTCCCGATTAATAGCAAAAACtcaaaattatgagatatataCTCAACACGTGAGATTTAAACTAAGAATTACAATATAACTTTAGAATTAGACTATTAGACAAACTTAATTATGAGACATAAACTCGAAATGTGAGATTTAAACTCAAACTTCAAATGATGATATGAACTCAGAATTAAGATATTAACTATATTAGAACGGTGAGGTTTAAAAGCACAGTTTAGAGAGTAATTTTGATTTTGACCTTTCCCTCCTCTGACTTCCAAGTTTatatcttgtaaaaaaaaaaagaaaagtggtgTTTTGCGGTGGAAAGGAAATCTCCGAATCAATGCGGAACGATTTATTTTCCCAGCCCAGCGTTGATCTCTAGAGTTCTGCTGTGGTCTACTCAAGCCTCTACAGCTTTGGCAGTGTTCAGGGTTTGCATAGGTGCTCAGATGTTGGTTTCTCGCTGCATGACGCCGTCTTTGTTATCACAGAGCTGCTGCGCTGCTTCGGCGTCGGCGTCGGCGTCCGCGTGGGTCTCCGTCTGCTCCTCGCGCTCGGCCCGCTTGTACGTCTCCTCCTGTTTGCGCTCGCGATCCAGCAGCCGATAGTTGATGAAGTTCCCGATGAAGAGCCAGATGCTGGAGAGGACGACCACCGCCCCGCAGCACAGCGGCGGGCCGATGAGCACCGGGCAGCACTCCACGATGGTGGTGAGCCCCACGGCGCTGGAGAAGCGCTGCGCTCCGACCAGGTCCATCAGCGTCTCGAACAGGACGGCGCTCACCATCCCGAAGGCGAAGCCGAAGAAGACGGCGTACACCACCATCCCGCTGTAGCTCTCGGCCAGCGGACACAGCAGGTGACACACGCCGTTATACAGCACGGCGAAGCTGAAGAAGTACTGGATGCGCGGCCGGACCCAGCGAGAGTTGGCCAGCAGGCCCATGGACGGCCGAGCGAACATGTCCACGAACGCCAGGATGGACAGCAGGAAGGCCGCCTGGTACTCGTCCACGCCGTTGTCTTTGGCGTACGACGAGAGGAAGACGATGGGCGCGAAGAAGCCCAGGAACATGATGACGTTTCCCGACAGATAGATGAGGAACCCGCGGTGCTTGAAGAGCGACAGATCCAGGAACTTATTGACCGTCTGCCAGGCCGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264891 lncRNA upstream 48477 503211 ~ 505537 (+) True G178557
TU264878 lncRNA upstream 96334 447009 ~ 457680 (+) False G178550
TU264875 lncRNA upstream 96334 456433 ~ 457680 (+) True G178550
TU264873 lncRNA upstream 121678 430013 ~ 432336 (+) True G178549
TU264857 lncRNA upstream 144202 406511 ~ 409812 (+) True G178537
TU264928 lncRNA downstream 79205 637678 ~ 638126 (+) True G178577
TU264949 lncRNA downstream 128965 687438 ~ 755183 (+) True G178589
TU264957 lncRNA downstream 128965 687438 ~ 756101 (+) False G178589
TU264958 lncRNA downstream 128965 687438 ~ 783476 (+) False G178589
TU264967 lncRNA downstream 205085 763558 ~ 769697 (+) False G178592
XM_043230726.1 mRNA upstream 15458 524357 ~ 538556 (+) False LOC122333210
XM_043230727.1 mRNA upstream 15458 524357 ~ 538556 (+) False LOC122333210
XM_043230725.1 mRNA upstream 15458 526305 ~ 538556 (+) False LOC122333210
XM_043230721.1 mRNA upstream 31474 507402 ~ 522540 (+) True etv6
XM_043230724.1 mRNA upstream 74621 469095 ~ 479393 (+) True LOC122333209
XM_043230815.1 mRNA downstream 21319 579792 ~ 599671 (+) True lrig3
XM_043230796.1 mRNA downstream 54869 613342 ~ 616781 (+) True echdc3
XM_043230748.1 mRNA downstream 64964 623437 ~ 631571 (+) True rtcb
XM_043230694.1 mRNA downstream 216903 775376 ~ 778054 (+) False crebl2
XM_043230693.1 mRNA downstream 216918 775391 ~ 778054 (+) False crebl2
TU264903 other upstream 15136 524311 ~ 538878 (+) True LOC122333210
TU264861 other upstream 97660 451126 ~ 456354 (+) True G178541
TU264814 other upstream 287286 264517 ~ 266728 (+) True G178503
TU264693 other upstream 339739 116245 ~ 214275 (+) True cunh11orf98
TU264989 other downstream 216939 775412 ~ 778365 (+) True crebl2
TU264990 other downstream 216939 775412 ~ 778365 (+) False crebl2
unassigned_transcript_2688 other downstream 241461 799934 ~ 800005 (+) True trnam-cau_120
TU264969 other downstream 277877 836350 ~ 838553 (+) True G178593

Expression Profile