RNA id: TU264949


Basic Information

Item Value
RNA id TU264949
length 1856
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G178589
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 687438 ~ 783476 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttTCTTGTTTTCGTCCACTTTTATTCATCCGTAATGTGAAAAGCACAAACATACACTTTAAAAGAAAGTGTTTGGTCTCTTGGTGGTGAAACGGGGCTTGTGCTGGCGACGCAGAACCCGGTGAGGAAGAGGGAACTTGATCTTGGAGTCCTGTTGAATTGAGaacaaaacaagcattaaaaCCCATCGCGGTTACGCTGCATCATGTGACGCCGATCTGAACACGCAAACTCACGTGGAACTGCTTGATAGCGGGTCTGCGGCATTTGTTGGCTTCGATGATCTGCACCTTCATGATCTGGATGGCGTGAGCTCGGGCGCGATGCCTGGCCCCCATATCACGATCTGAGGAGACCAAAAACACGACGTTTACTACAGAGCACAAGCAAGCAGCAGAGGAGCGTGTCGCACCTTGAATTCACTTTCAGCGGCACGTTCACAGCCTACTAAAGGCGACAAGGTTCGGCTTTTCTGTCCGCACACAGGGCAAGGGCATGACACCGGCAGGAAATGACCTTTGGGTTTGTGTGTGCAGGCCGACGGCGAGCGTGTTTGACAGACTCACAGCACTGAGTGACGGCTCCAGACGTGGTCAGGTCTCTGTACTCGCGGTACATGTTGTGGGTTCCACTGCGAGAGTCGTAACGCAACCAGATGCCAAAGTTCTTCACCTTGAGAGGAGATTTCTCGTGGACCTGTTCAGGAACgcaacacgcacacaaacaagGGGTTAAACGTCCAGCCGCTCAACTGCATTAACAGCTGTGCAGCACATCAACTATGCTAGCTGCTTTTAATTACTAGACCCCTGACCCAgcccccaaaaattaaaatatctatCCCATCAAGAGAGCAGCAAAAATCGGCATCCGacaattaaaaaccaaaaaacaaaaaaaagaactgaaCTTCATACAGAcctgtcaaataaaacaaaaaaaggtcaaattttTATCAATGCTAAATCAAAAAAGGGAATTGAAGCCAACACATTAATAACTCGACCATCACAAGAGGATCTATCCCACACCATTAggtattaaaaatggaaaaagaaattgACCCTtatccgtaaaaaaaaaaaaaaatcaaaaaggcaACACAAATGGACACAGACTCgacaaataaatgacaaacatCCTTTAAAAAGCACCTCCCATCCGTTAAAAAGGGAATCAACCCTAAAGAGTCAAAAAAAGAGAGTGGACCCAGCCTCGAGGATTTAAAGGAAACTGAACATCATCAAAAGAGTCATGTCCTCACAAACGACAGGAGCGTGTCGCACCTTGAATTCACTTTCAGCGGCACGTTCACAGCCTACGAAAGGCGACAAGGTTCAGGTTTTCTGTCCGCACACAGGGCAAGGGCATGACACCGGCAGGAAATGACCTTTGGGTTTATGTGTGCACTGTAACACTTTAGTGAACAATTCACATCTTGGGCTTACTGACCGGGATGGGACGGTGAATTATTTCAAACTTCTTTCAGACGATTCTTTAATAAATTGGTTAAAAACCTATTCCAGAAGCTCTCTCACACATTTCTAGCAGGTAAAGGGACTCGACCAGCCCCGTTCATACCAGGCCACAATAGACGATCTCTCCGGAGGCTTTCTTCATCTTCCTCAGCTGGGAGACGAAGTACCAGAAGCGAGACTTGGCCACTACATGGTTAGGGGCGAAGATCCTCATGCGGTAGAGAGGGGGTGCGGGGTTTTTAGCAGAGGGCAAGAGACGCCCCACAACCTTATACTCCCGAAGCTGCAGAGAGACACAAAACACATCAGCTCCAGGACAACCTAAGGATTAGGTGGACGTTAACTTCCACTGcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264928 lncRNA upstream 49312 637678 ~ 638126 (+) True G178577
TU264904 lncRNA upstream 128965 554014 ~ 558473 (+) True LOC122333249
XR_006248600.1 lncRNA upstream 132655 553127 ~ 554783 (+) False LOC122333249
TU264891 lncRNA upstream 181901 503211 ~ 505537 (+) True G178557
TU264878 lncRNA upstream 229758 447009 ~ 457680 (+) False G178550
TU264967 lncRNA downstream 8375 763558 ~ 769697 (+) False G178592
TU264968 lncRNA downstream 8375 763558 ~ 769697 (+) True G178592
TU265001 lncRNA downstream 43359 798542 ~ 799412 (+) True G178617
TU265003 lncRNA downstream 87653 842836 ~ 843975 (+) True G178619
TU265005 lncRNA downstream 90242 845425 ~ 910595 (+) True G178621
XM_043230748.1 mRNA upstream 55867 623437 ~ 631571 (+) True rtcb
XM_043230796.1 mRNA upstream 70657 613342 ~ 616781 (+) True echdc3
XM_043230815.1 mRNA upstream 87767 579792 ~ 599671 (+) True lrig3
XM_043230727.1 mRNA upstream 148882 524357 ~ 538556 (+) False LOC122333210
XM_043230694.1 mRNA downstream 20193 775376 ~ 778054 (+) False crebl2
XM_043230693.1 mRNA downstream 20208 775391 ~ 778054 (+) False crebl2
XM_043230734.1 mRNA downstream 46362 801545 ~ 835314 (+) False eps8a
XM_043230735.1 mRNA downstream 46362 801545 ~ 835314 (+) False eps8a
XM_043230736.1 mRNA downstream 46363 801546 ~ 835314 (+) False eps8a
TU264903 other upstream 148560 524311 ~ 538878 (+) True LOC122333210
TU264861 other upstream 231084 451126 ~ 456354 (+) True G178541
TU264814 other upstream 420710 264517 ~ 266728 (+) True G178503
TU264693 other upstream 473163 116245 ~ 214275 (+) True cunh11orf98
TU264989 other downstream 20229 775412 ~ 778365 (+) True crebl2
TU264990 other downstream 20229 775412 ~ 778365 (+) False crebl2
unassigned_transcript_2688 other downstream 44751 799934 ~ 800005 (+) True trnam-cau_120
TU264969 other downstream 81167 836350 ~ 838553 (+) True G178593

Expression Profile