RNA id: TU264990


Basic Information

Item Value
RNA id TU264990
length 2168
RNA type TUCP
GC content 0.42
exon number 3
gene id crebl2
representative False

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 775376 ~ 778365 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGGAAAAGCGCTGTTAGCATTCGGCTAAAAACACAGGCAGCTCCACTGGAAGATTGATCAAAAATCATCTCAATCGGATTCTCTGATCGATTAAAGATGGTTGCTGGAAAAGTGAAGAAACCAGGCAAACGCGGCCGCAAACCTGCCAAGATCGACCTGAAGGCCAAGCTGGAGAGAAGCCGGCAGAGCGCTAGAGAGTGTCGCGCCAGGAAGAAGCTACGCTACCAGTATCTGGAGGAGCTGGTGTCCAGTAAAGAGAGAGCCATCTGTGCACTGAGAGAGGAGCTGGACATGTACAAGCAGTGGTGTCTGGCCATGGACCAGGGGAAGATCCCATCCGAAATCAAAGCCCTCCTCACCGGAGACGAGCAGAAAGCACCGCAGAGCACCAGCAACAAGATCCCCAAGAACGGCAAGTACGGCTCCGGCCAGAACAAGACGTCTTAGACGGGTCCGGAGCGCGTGCGTTTGGATGCGTGAATGCGGACAGTGTTGACTCACAGTGTTTGTCTGtcgttttgtagtaatgggacGTTTGAAATAAGCTTTTCTGTTTGCATTCACAATAATACCACCGTTCAGACATTAGAGCTTTATTCCTGTTGATTTGACGTGATTCGCGTTCATTTCTTGTGTTGATTTGTGAGCGTTCTGTGTGACTCGTAAACATTTCCTCctcctttatatatttattttggaaccGTTCTGGTACCAAATCATTTGTGATGAAGGATGCAGCCTTCGTGAGTCCAGTTTACcactggataaaaaaaataataaaggtaaTTGTGCCTTTTTATCACACAATATTGAGTTTGTGTGTCACAATTCGAACTTTTTTTTCTAGTAAATCtaagaaaaaaaggcagaattgcgagatattaACTCGAAATGGCAAGTTTTGAGCTTAGTTCTTCTGTATACTTGCTAAattgttgataaaaaaaatctaaccaaAAATACAAGTGCAAGATAACTCAAAGAAGCCAGAATGCTGTGTTTATATCTGGCAGAACCGTGAGATACAAAGTCAcaatttcctgttttttttttttctcgttatTCCATGGTGGAAGCAAGCTCCCGTGTTACAGAATGAGACGATTCGTCACTCGAGAGCAGGGCTggagagtttagctccaaaacCCCAATCAGACACCCCTGAAGCAGCTCATCAAGCTCTTACTGGGCAGGTGCGAGTCGAGACGAGTTGGACAGCCCTGCTCTAGTGTGTGTAGAATGGGTTGATTCCACTGAACCTATAGGCAGAGATGTTAAAAGACAGACTTTTGCCAAAATCTCTAGCTCAGCTTTTGCACTTTACGAGATTTTAAAGATTTCAACGCATAGCACTTCCCTTTTCTCTTGTACAAGTAGAGTTTGTCTGCGTCCGTTGTTGATCGCGTATTTATTTCACTAACCGAAACTTAAAGCACTTTCCTTCGAAGCTCtaatttttgtactttatttgaaAGTTTAATCTTTCTGCTTTATCTGGAAGGTTtgccaaaaacaaaaacgacaAAATAGCTAATATTTCGGCACAGATCTGAACGAATGTGAAACCCTTTCATCAGTGTTGATCAGCCCAAACACAGAGATGTAGAAGTGTTTCGAGAGAAGTTCAGGTTTTAATGAACGAGAAACACTTTCCTCTGCCTTTTCCTTGTGACTCTTGCCTCTGATTCTCGCTGGCataatcaataatatttagagctcaaatgtatatttttatatggcGTGTATAAAATGTAGATTGAAATTTGTTGCAAGATGATGCTTATTAATGCTGAACGTCTTATTAAACGATGTAGCTTTGCTTTGTGATCATGAACATAAAAACGTTGAATCCGAATCTTCTTGTCTTTCTTGCCTCGGATGAGTTTGATTAGAGCTCAGATCAAGCCTGTGATATAGCACAAACTAGGGTTTCTACCCCAAAATGCTGTGTTTGTGCTTTCAGATGGACAAAATGCATATGACAAAGCTGAGCGCGATGAATGCATTGCTAGCTCAGATCCGTAATGATGCAGGtaaatgtgctgctgctgtcaTTCTGTGCAGCTGAAGGTTTTTCTTTTGTCTCGGTTCAGAATCCAGAGCAGCACAAGTGCTTTCATTGTCCTCGCTTTCAATATGAAATCTCATTATGATGTGTGTTTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264967 lncRNA upstream 5715 763558 ~ 769697 (+) False G178592
TU264968 lncRNA upstream 5715 763558 ~ 769697 (+) True G178592
TU264957 lncRNA upstream 19311 687438 ~ 756101 (+) False G178589
TU264949 lncRNA upstream 20229 687438 ~ 755183 (+) True G178589
TU264928 lncRNA upstream 137286 637678 ~ 638126 (+) True G178577
TU265001 lncRNA downstream 20177 798542 ~ 799412 (+) True G178617
TU265003 lncRNA downstream 64471 842836 ~ 843975 (+) True G178619
TU265005 lncRNA downstream 67060 845425 ~ 910595 (+) True G178621
TU264947 lncRNA downstream 76429 854794 ~ 1001239 (+) False LOC122333252
TU265015 lncRNA downstream 89089 867454 ~ 868576 (+) True G178627
XM_043230748.1 mRNA upstream 143841 623437 ~ 631571 (+) True rtcb
XM_043230796.1 mRNA upstream 158631 613342 ~ 616781 (+) True echdc3
XM_043230815.1 mRNA upstream 175741 579792 ~ 599671 (+) True lrig3
XM_043230727.1 mRNA upstream 236856 524357 ~ 538556 (+) False LOC122333210
XM_043230734.1 mRNA downstream 23180 801545 ~ 835314 (+) False eps8a
XM_043230735.1 mRNA downstream 23180 801545 ~ 835314 (+) False eps8a
XM_043230736.1 mRNA downstream 23181 801546 ~ 835314 (+) False eps8a
XM_043230730.1 mRNA downstream 40529 818894 ~ 835314 (+) False eps8a
XM_043230728.1 mRNA downstream 40530 818895 ~ 835314 (+) True eps8a
TU264903 other upstream 236534 524311 ~ 538878 (+) True LOC122333210
TU264861 other upstream 319058 451126 ~ 456354 (+) True G178541
TU264814 other upstream 508684 264517 ~ 266728 (+) True G178503
TU264693 other upstream 561137 116245 ~ 214275 (+) True cunh11orf98
unassigned_transcript_2688 other downstream 21569 799934 ~ 800005 (+) True trnam-cau_120
TU264969 other downstream 57985 836350 ~ 838553 (+) True G178593

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000322_00129591_00130773.mRNA True 890 mRNA 0.43 2 CI01000322 129052 ~ 130773 (-)