RNA id: TU265200


Basic Information

Item Value
RNA id TU265200
length 3035
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G178757
representative False

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 458053 ~ 520366 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaaagtaaataagataaaaatgtaaaatagaaaaataacatatacattatatatatatatatctatataaatcaaggtaaattaagaaaattaataattcatataaaatgtataaaattaataaattaaatgaattaaataataaacattcaatttccaaaataaataaaaataaaaagggcgATAGTGTAAATCATCTGAAGGAAGTCGTCAGTCTTTATGTTGTCTCATGAAAACTGCACGTCCTTTTTTAAAGAGCTTCCTGAAAGAACTTGAAATGATTCTTAAAAAGGaaacacgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactctctctcacacacacacacactctctctcacacgcacacactctctctcgctctctctctcaagctcacacacacacacacactctctctctctcaagctcacacacacacacacacacactctctctctctcaagctcacacacacacacacacacacacacccgtcTCAGTTCTCAGTTCGCTCTCTGGAGGGAAACTCCTGGTTCCAGCAGGTGACGGTTGCGGCTCAATTACGCACCAGCACTTCCTTATCAGCAGTTTACCCAACTTTCTACTTCCTCCAGTGAGCGTGAGCACAGAAACAGCCCTGTTTCAGCCCAGATTAAACACTTTTACCCACAATCCTGTCCTGTGACTCCTCAGTGTGTGTCAAGCAGCGGATGGacagacaacaacaaaacttctttttcttcataaagAAAAACTCATGAAGCGTAAAGACAGGGCTGCAGTGAGCTCTGAGGATATTAATCCACGCTTTAAACTTTTGAgacgtgttttttttatttgaactctttataaaataaataaatcaataaataatcacgtttaaatgcaatacaaaaacaaagtgtgtgtatattttgcaataaacttaaaatatagtttGTAATCGTTATTACaaatgataataatcataataaaaaaataaaaaaattcttaggattttaacaaatgtaaaatgagatatctaatatatataaacattatatttatacttttaatatttaattatatattttccaaaaaatatcaactaacacacacacgcacacacacacacacactgaaccaATCAGGTGACTGTGTGGGCGGGGCAAGCAGCAGAAGTGTGTGTATGACAGCAGCAGGTGCTGATAAATGGTGTGTGTGACTCaagatatatttacttatatagtgcttttaacaatacagaaaatTAATATAGAATCAAATAAAGAGAACAGAGTGATAGTGATGTGTAATGAACAGATTAAAcactcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacctgaGTGAGGAGAGCGGTATCTGAAGTCCTCTTTGGTGAGCAGCAGCAGGGCTTTCCCGTTCATCTGGAAGCTGGCGCTGGATATGGGCCTCAGAGCGAACTCCCTCTCCGCCCAGCGCAGCCACTGACACACATCCTCACGACTCCAGAACACCGGCTGCatccctgaacacacacacacacacacacacacacttaaacactctcacacacacactggggcTGCATCAGAGAGCACAGATATCAGAGACGagacgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtggttcagcgtgggaaaaacacacaaacttgAACATCTGCACGACTGTGTCCGCCAGAACCTTCCCATCAGCCCCTGCTCTCCGTTGATGGGAATAGAGctcatgaatgtgtgtgaaacTATTTTCATACAAAGAAATAcgaataaaaatctataatagtATAGAAATATTACCATAACAATGCCAATGTGTTAGCACTGGTAGAGTGTAAATTCATTACACTATACACTatacactatacacacacacacacactgatatatatatatccctctTTTTTCTGGTCTTTGAAgcaaaatcaaactaaaaaacAGTCCAGAgactctctcgctctcatctGTCACAAAACCACTgccttcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgctctctctctcggtACACGTCACACATGTAATCAGGCCGGAGCTTCAGATCCATCCAATAAAAGCAGATTATTCAAGAGTTTTTGATCTGTCGCCATTATAatctatacaaataaatatattaaataaacaaattaaattaaatatttcatgtaaCGTTCTGAATAAACGGTTGgtctatataataaataaaaagctaaataaaattataattgtattatattaactCTATATtatcattcttttgttttatttggtctttcatttgtatttttgtatataaaaatattaatgtgcatttataataaattttttaaataataaattgacaaATTGATGCACGCACATACATGTAAGTAAGTGTGTGTAACATTcactatttaaaatgcattatttaaaaatgaacgcATTATTGCAGTGATTTATGAAGGGAGGataaaggtcaaaggtcatgtaACGGTCACAGAAGCTCGCTCAGATCTGGCGTGTGTCTCAGCATCTGCTCCCACAGAAACCGTTACCCATGACAACGCCAACCTGACAggaagtcaaacacacacacacaggaagtcaGGAACAGGCGCTCTGCAGTGATGCGGAGACTATAAACTGAGGAACATTACactcaacatgaaatcaaaactcAAACTACACTGATATTAGTCCACAGAAATCAATGCTGCTCTTCATAACTCACTTCCCTTTTAATATGATATAGAAACATATCTAAAAAAcagttacaaataaaacaaaaataggtCAGTTCAGAtagaaatacattattttatatgtattattgatttgtaaatattatattatttattataaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265178 lncRNA downstream 34255 478193 ~ 480561 (-) True G178742
TU265214 lncRNA downstream 106650 406515 ~ 408166 (-) True G178759
TU265184 lncRNA downstream 123512 361967 ~ 391304 (-) True G178746
TU265235 lncRNA upstream 22083 540059 ~ 540286 (-) True G178779
TU265236 lncRNA upstream 27511 545487 ~ 545785 (-) True G178780
TU265240 lncRNA upstream 35124 553100 ~ 553524 (-) True G178782
TU265303 lncRNA upstream 313361 831337 ~ 833743 (-) True G178828
TU265254 lncRNA upstream 338503 856479 ~ 946523 (-) True G178791
XM_043230719.1 mRNA downstream 9246 455677 ~ 505570 (-) True LOC122333205
XM_043230710.1 mRNA downstream 84389 398388 ~ 430427 (-) False ptpro
XM_043230709.1 mRNA downstream 84390 398388 ~ 430426 (-) True ptpro
XM_043230711.1 mRNA downstream 100331 398388 ~ 414485 (-) False ptpro
XM_043230716.1 mRNA downstream 185214 317759 ~ 329602 (-) True sim1b
XM_043230798.1 mRNA upstream 36533 554509 ~ 569266 (-) False zgc:165507
XM_043230797.1 mRNA upstream 36533 554509 ~ 569230 (-) True zgc:165507
XM_043230794.1 mRNA upstream 99347 617323 ~ 622893 (-) True fbxo7
XM_043230795.1 mRNA upstream 99347 617323 ~ 622840 (-) False fbxo7
XM_043230747.1 mRNA upstream 113508 631484 ~ 645982 (-) True xpot
TU265167 other downstream 178202 307212 ~ 336614 (-) True G178734
TU265160 other downstream 259974 251477 ~ 254842 (-) False sobpb
TU265156 other downstream 271737 237056 ~ 243079 (-) False dpysl5b
TU265131 other downstream 279064 223349 ~ 235752 (-) True G178709
unassigned_transcript_2687 other downstream 301818 212911 ~ 212998 (-) True trnay-gua_46
XR_006248609.1 other upstream 235775 753751 ~ 753886 (-) True LOC122333265
XR_006248608.1 other upstream 236649 754625 ~ 754758 (-) True LOC122333264
TU265306 other upstream 365277 883253 ~ 890779 (-) False LOC122333240
XR_006248601.1 other upstream 393928 911904 ~ 924259 (-) False mtpn
TU265340 other upstream 617514 1135490 ~ 1139105 (-) False G178856

Expression Profile