RNA id: TU265203


Basic Information

Item Value
RNA id TU265203
length 4538
lncRNA type sense_over
GC content 0.42
exon number 3
gene id G178757
representative False

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 458053 ~ 520366 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCGATGCGGCCGATGGGCGTGGCCTGCTCCTCGGGCGGAGACACAGGCATGATGATGTGGTTGCGGTAGTGACGCTCGTCCTGCAGGGGGAGCTGGAGAGGCGTCTGATGGGCAAAGTGcgcttgacctttgacctcgcGGCCGTTCTCCTGCGGCGCTCTCCTGTAGTCGGGGCCCAGCAGCGGGTGCATGATGGCGCTGGGCATGAGCTGGATGACTCGGGCCGGCGGCGGAGGCTCCTCCTGAAGCACGCAGTGACCGTTAGCCGCCGACGGAGACACCGACAGAGGATAGACGTCGTCCTGCGGGTGGTGGTTGCTGTCGGGCAGCTGTGCGGACGCCTGCTGGGGGTCCTCCGAGCGCAGCGCAGCGGGCAGATGATGGGGCGAGCGAGAGCGATGGCGAAGCTCGATGGTCGGCGGATGCAGAGAGTGAGTGTCTGCGGTGCGAGAGCCGCCGCGTTTCGCACaccgttcacacacacacacacacacacacacacacacacacacacacacagggaatCAACATCAGAGACATGATGACCTCCTCTAGTGTGTGAATCAGTCCAGCTGGGGTCACTAATGGACTTCTTTGAGATATGAGAGGCAGGGTTGCCAAGTCAGCGGTTTTCCCGCAGCTACTTCAAAGACAATACATTTAAGTTTTTGACTccattaaagcataaaaataccatgatatgtttgcaaatatttaaagtgctcctattaAGGTaaaaaaggttcatattttggttttgggagtcatttcctttaaatatgcatttatttgtacttttttgctAAATGACTTCCAAATGATTCGTTCAACGGTATGTTTTCCAAACTTCATACAACTCTGATTTCATACCACGCAgtttttgtgagcttttaacgctccgAAAGAGACAGCTAGTGGTGaagaataaatgtacatttttaatcagaGAATGCAAGAAAACTAAAGCTTTGTGGCAATATGCTGATGTTTGATGTCAACCTGAAACGGCTCGGGACTCATCTTAAAAACGATTCGATGATTCGGAGTCGATTCTCCTTTGATTCTGGGCCAGAacgtctgtgtttgttttgatctGTAACCCGTCCACTGACGGAGGAAAACAGTGCTTTTCACTTCAGTCATGGGAGCTGCGCTCGgtccaatctggcaacctgcatgtGTCTGAGGAGGAGGGGCCcggtttaaaaaacactttttgcgcaatttaatgcattcttaatGAACGAAagtattagtttaaaaaaaaaagacaattttcaacaatctatataaaatattttgtttttaatatattaaaaaactattatattcatatattaagtaaattaCTGCTAATTATACTGACAATGTCATGAAAAATTCTCAGGTGAAtcgaaagtgtttttttttttttaatagaaatcttttgtaacattataaaagactTCAGTCTCACAAACAAGACTCAAGCCTAATCCCAGACTAAAAGACTGAGCCGTTTCACCTGAGAAACACatcagtattatttttattgcgtGAACTACTTGTCTAAACCCGAGCCCCGGCTGTGAAACTAAAGCTGCTCTCCTGTAGTTCTCCTCTGCACCACCAGAGGGCCTCAGATCCTGGAGCTCTCCTGAAGCTCTGGAGAAGGTGTGTCTACATGCATCATGTGACTCGGGAGATCCTCTTTCAGGAAGTCTTCTCATATATTCCTGTTGTTTGTCTGCACTCACAAACTTCTGATTAACTACAGCAGCGCTTCCTCGTCCGACCGGTTGTTCTGTCAACATTCCAGACGGGCACTTCCTCCAGGATCGTGTTTTCAGCCGAAACAGAAGAAGAGCGGCTCACCTTCGAGTTTGTGCGTCTGCAGCGGAGCGTCGCCGAGCGTCTGGAAGGAGCCGATGGGAAAGAACGGAGACGAGACCGAGTGAGTCTTCCTCTGCTTCAGGATGTGCTGCAGGAGCTCGTACAGAACATCACCTGtcgatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcagacACCTGCGCTGGCCCTACAGAAGCTGTGCAGCGCCCCACACCTGAAATCTGCACAGCAAACAAACACCAAGATAAAGAAGACTTGACACTcgatgaagaaataaaatgcaaactgaaataaaacatgaataaaatacatttgattttatcaattaaataaaagtaaacgaacaaaactaaattaataaacaactgaataaagtaaataagtcaaaaataaaacaaactgatatATAGTCAAGTTTCTAAAATCAAGTAATATAACTTATCAAAAtgaattaacatgaataaaataaattaaagtaaataagataaaaatgtaaaatagaaaaataacatatacattatatatatatatatctatataaatcaaggtaaattaagaaaattaataattcatataaaatgtataaaattaataaattaaatgaattaaataataaacattcaatttccaaaataaataaaaataaaaagggcgATAGTGTAAATCATCTGAAGGAAGTCGTCAGTCTTTATGTTGTCTCATGAAAACTGCACGTCCTTTTTTAAAGAGCTTCCTGAAAGAACTTGAAATGATTCTTAAAAAGGaaacacgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactctctctcacacacacacacactctctctcacacgcacacactctctctcgctctctctctcaagctcacacacacacacacactctctctctctcaagctcacacacacacacacacacacacacccgtcTCAGTTCTCAGTTCGCTCTCTGGAGGGAAACTCCTGGTTCCAGCAGGTGACGGTTGCGGCTCAATTACGCACCAGCACTTCCTTATCAGCAGTTTACCCAACTTTCTACTTCCTCCAGTGAGCGTGAGCACAGAAACAGCCCTGTTTCAGCCCAGATTAAACACTTTTACCCACAATCCTGTCCTGTGACTCCTCAGTGTGTGTCAAGCAGCGGATGGacagacaacaacaaaacttctttttcttcataaagAAAAACTCATGAAGCGTAAAGACAGGGCTGCAGTGAGCTCTGAGGATATTAATCCACGCTTTAAACTTTTGAgacgtgttttttttatttgaactctttataaaataaataaatcaataaataatcacgtttaaatgcaatacaaaaacaaagtgtgtgtatattttgcaataaacttaaaatatagtttGTAATCGTTATTACaaatgataataatcataataaaaaaataaaaaaattcttaggattttaacaaatgtaaaatgagatatctaatatatataaacattatatttatacttttaatatttaattatatattttccaaaaaatatcaactaacacacacacgcacacacacacacacactgaaccaATCAGGTGACTGTGTGGGCGGGGCAAGCAGCAGAAGTGTGTGTATGACAGCAGCAGGTGCTGATAAATGGTGTGTGTGACTCaagatatatttacttatatagtgcttttaacaatacagaaaatTAATATAGAATCAAATAAAGAGAACAGAGTGATAGTGATGTGTAATGAACAGATTAAAcactcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacctgaGTGAGGAGAGCGGTATCTGAAGTCCTCTTTGGTGAGCAGCAGCAGGGCTTTCCCGTTCATCTGGAAGCTGGCGCTGGATATGGGCCTCAGAGCGAACTCCCTCTCCGCCCAGCGCAGCCACTGACACACATCCTCACGACTCCAGAACACCGGCTGCatccctgaacacacacacacacacacacacacacttaaacactctcacacacacactggggcTGCATCAGAGAGCACAGATATCAGAGACGagacgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtggttcagcgtgggaaaaacacacaaacttgAACATCTGCACGACTGTGTCCGCCAGAACCTTCCCATCAGCCCCTGCTCTCCGTTGATGGGAATAGAGctcatgaatgtgtgtgaaacTATTTTCATACAAAGAAATAcgaataaaaatctataatagtATAGAAATATTACCATAACAATGCCAATGTGTTAGCACTGGTAGAGTGTAAATTCATTACACTATACACTatacactatacacacacacacacactgatatatatatatccctctTTTTTCTGGTCTTTGAAgcaaaatcaaactaaaaaacAGTCCAGAgactctctcgctctcatctGTCACAAAACCACTgccttcctgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265214 lncRNA downstream 49887 406515 ~ 408166 (-) True G178759
TU265184 lncRNA downstream 66749 361967 ~ 391304 (-) True G178746
TU265180 lncRNA downstream 68682 382302 ~ 389371 (-) True LOC122333201
TU265181 lncRNA downstream 68682 384755 ~ 389371 (-) False LOC122333201
XR_006248598.1 lncRNA downstream 71937 383687 ~ 386116 (-) False LOC122333201
TU265235 lncRNA upstream 19693 540059 ~ 540286 (-) True G178779
TU265236 lncRNA upstream 25121 545487 ~ 545785 (-) True G178780
TU265240 lncRNA upstream 32734 553100 ~ 553524 (-) True G178782
TU265303 lncRNA upstream 310971 831337 ~ 833743 (-) True G178828
TU265254 lncRNA upstream 336113 856479 ~ 946523 (-) True G178791
XM_043230710.1 mRNA downstream 27626 398388 ~ 430427 (-) False ptpro
XM_043230709.1 mRNA downstream 27627 398388 ~ 430426 (-) True ptpro
XM_043230711.1 mRNA downstream 43568 398388 ~ 414485 (-) False ptpro
XM_043230716.1 mRNA downstream 128451 317759 ~ 329602 (-) True sim1b
XM_043230718.1 mRNA downstream 148404 303576 ~ 309649 (-) True mrap2b
XM_043230798.1 mRNA upstream 34143 554509 ~ 569266 (-) False zgc:165507
XM_043230797.1 mRNA upstream 34143 554509 ~ 569230 (-) True zgc:165507
XM_043230794.1 mRNA upstream 96957 617323 ~ 622893 (-) True fbxo7
XM_043230795.1 mRNA upstream 96957 617323 ~ 622840 (-) False fbxo7
XM_043230747.1 mRNA upstream 111118 631484 ~ 645982 (-) True xpot
TU265167 other downstream 121439 307212 ~ 336614 (-) True G178734
TU265160 other downstream 203211 251477 ~ 254842 (-) False sobpb
TU265156 other downstream 214974 237056 ~ 243079 (-) False dpysl5b
TU265131 other downstream 222301 223349 ~ 235752 (-) True G178709
unassigned_transcript_2687 other downstream 245055 212911 ~ 212998 (-) True trnay-gua_46
XR_006248609.1 other upstream 233385 753751 ~ 753886 (-) True LOC122333265
XR_006248608.1 other upstream 234259 754625 ~ 754758 (-) True LOC122333264
TU265306 other upstream 362887 883253 ~ 890779 (-) False LOC122333240
XR_006248601.1 other upstream 391538 911904 ~ 924259 (-) False mtpn
TU265340 other upstream 615124 1135490 ~ 1139105 (-) False G178856

Expression Profile