RNA id: XM_043230787.1


Basic Information

Item Value
RNA id XM_043230787.1
length 2254
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122333240
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 881458 ~ 890779 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTTTATTCAGCACCGTCTGAGAGAAGAGTAGAAACATCATGACATCTCTCTGGATTCTGTCCGTGTCAGCGCTGATGTGTCAGATGTCCATCACTGCGTCTCTTCACTGGAGGAAAGctcTGTTCCCATCAGCCTTCAGGGTGAAGCGAGGGACTCCGGCGCTGCTCAACCCCAGCTTCCAGAAATCAGCGCAGGACGCCGGCCTTCTGTACGAGGTGCTGTGGTCAGGAGGGTACATGGACGCGGCGGACGGGACGCTCCACGTGTCCGATCGGGAGCTGGCGTCCGTGAGGAAGCTGGAGCTCCTGGAGGTGCTGTGCGAGGACGTGCTTCCCAGAAGCCTCTCTGAGATCCGGCGGCTCGGCGCAGAGCTGGAGCGGCGGCGGGGCTCGCTGAGGCCCGAAGACTTCGAGCGCACCGTCCTCACCATGGCCTTCACCGCTCAGAGACTGCCCCGCACCAGCCCCGGCCACCAGAGGGAGCTGTGGGCCGACGCGCTCCTGAGACTCTACCGGGCCGTCAGAGAAGACCTGCGGCCTGCAGACGACTGACACAATATTAGGATATTACTTTtagatgttttgtgaatacgGGCCTTGATCATCACAGCATTCATTGTTCATGGGcgtttttctgaaacattttagttAGAGGTTCgccaacatttttacattacaattatatacattaaatattaagtaaaagaTGTTTCAGAAAGTCATGGTTGCATAATGTtgcataattataaaattgAATCCCTTTTTAACCCCAACAAAAGGATGTTAGGAATGTTGAGAGATCATTGAGATAATGTTTTCTTAACTAATCTGCGATGTTACCTAATTGTTACTtgaacatcattttttttggcCAGGCTTCTGAGCGCAGATGTTAGaggaaaaacaatgctaaatgcaaataataaatgcagctgtAAGCATATAATAGAGTAAAATTAGGTGATGgcagcaatttattttatacattatttataactatttgaaaataaatggttataaatattttatactgtaaatctgtaaaataaacagcatattgTTATAGTATTTCTCACAAAtagcctaaaaataaaataaaatcaaaacgcCTCGTTctcaaaaaagtacatttcacaTAATacttacaatatattttatattcatttttaacaaatatataggtcaagtaaacatattttttattctgtgatgCTGTTACAGTATTTCTCCACAGAGAagctgttaaaaacacaaaataaataaattttaaaaaaccccaaaaaggtTCAAAATACAGTCTAACActtacaaataatgtttttattttcatatagttgaggaaggttctttagattattaaaatgctctGTACACTAAGAAGAAATGTTCGTTCTGAAAGGCTCTTTAGGGGACCAGAGATGGTTTTCTATGGCACTGCCGTGAAAACAGCCTTCATTTTGAAGCGTAGAATCTGTTTCCCGAAGCAAACCCTGTTGAGAAGCACCGGCTCGCTGGACTTCTCTAATTACAGAGCGCTCAGATGAATATGAGGCGCATCTTAAGAACCGTGTTTGCATAAGTTCACCTTCACAGCGACAGATCGCACTCTTTGCATAAACGTGTCGTCTGTGCAGCTGAAGGGACGTGATGCAGCAGGAGCAGCTCTGGTGTCCTTGCCAGGCCTGTCATTTCTCCTCAGATAATGCATCTCCTAATAGAATCATTATCACGTCCTTGACCGTGTTTCCCTGCCATTTCACCTGGAAATGTTCCCAGTGGCGCATCAAAAGCTGCTCTCGCTCGCCTCAAAGCTGCGTTCAGGAGGAAGCGTCGCAGGGAATGTGACTGATATTAAAGCTAAAACTTCACAGTGTCTTCACTGCGTTAAACGAGCCCCCTACATGAGACCATAAAGGACTGGGGTCTTCATTTCGCCTGTGTTTTATCCAACACCTCAGCATCTGCCACCTGAGCGAAAGCGTTAAGACACACTTATGAGAGATGATGGTGATGAACAAACCATCATAACCCAGTGGATCCAGACTCATGAATTCttccaaatgtgtgtgtgtgtgtgtgtgtgtgtttgtcacgTGTCAATAGCGCCATCTGCAGGCCACGAATATAATAGTTTTGtggcattataataaaaaactttATTCGGCTTTTTTCCCGCTTTTCTAATCAGGTGTTTCTCAGGTTTATGACACTGAtgtaaaattttgttttataaattcgtttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265303 lncRNA downstream 47715 831337 ~ 833743 (-) True G178828
TU265240 lncRNA downstream 327934 553100 ~ 553524 (-) True G178782
TU265236 lncRNA downstream 335673 545487 ~ 545785 (-) True G178780
TU265235 lncRNA downstream 341172 540059 ~ 540286 (-) True G178779
TU265200 lncRNA downstream 363482 514816 ~ 517976 (-) False G178757
XR_006248605.1 lncRNA upstream 68793 959497 ~ 984681 (-) False LOC122333259
XR_006248606.1 lncRNA upstream 83347 974051 ~ 1004255 (-) True LOC122333259
XR_006248607.1 lncRNA upstream 83348 974052 ~ 1022163 (-) False LOC122333259
XR_006248604.1 lncRNA upstream 83353 974057 ~ 984681 (-) False LOC122333259
TU265332 lncRNA upstream 153678 1044382 ~ 1045445 (-) True G178853
XM_043230761.1 mRNA downstream 433 860592 ~ 881025 (-) True upf2
XM_043230762.1 mRNA downstream 433 862614 ~ 881025 (-) False upf2
XM_043230738.1 mRNA downstream 37408 836294 ~ 844050 (-) False rpap3
XM_043230737.1 mRNA downstream 37408 836294 ~ 844050 (-) True rpap3
XM_043230779.1 mRNA downstream 81941 786810 ~ 799517 (-) False tbk1
XM_043230799.1 mRNA upstream 21200 911904 ~ 924259 (-) False mtpn
XM_043230800.1 mRNA upstream 24078 914782 ~ 924260 (-) True mtpn
XM_043230760.1 mRNA upstream 152679 1043383 ~ 1070443 (-) True ptn
XM_043230740.1 mRNA upstream 199111 1089815 ~ 1105373 (-) True tulp3
XM_043230741.1 mRNA upstream 199111 1089815 ~ 1105371 (-) False tulp3
XR_006248608.1 other downstream 126700 754625 ~ 754758 (-) True LOC122333264
XR_006248609.1 other downstream 127572 753751 ~ 753886 (-) True LOC122333265
TU265205 other downstream 361092 509272 ~ 520366 (-) False G178757
TU265206 other downstream 361092 515717 ~ 520366 (-) True G178757
TU265167 other downstream 544844 307212 ~ 336614 (-) True G178734
XR_006248601.1 other upstream 21200 911904 ~ 924259 (-) False mtpn
TU265340 other upstream 244786 1135490 ~ 1139105 (-) False G178856
TU265345 other upstream 244786 1135490 ~ 1139105 (-) False G178856

Expression Profile