RNA id: TU265318


Basic Information

Item Value
RNA id TU265318
length 2147
lncRNA type sense_over
GC content 0.47
exon number 6
gene id arid2
representative False

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 1180688 ~ 1200891 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGCTTGTAATGTTATAAACTTCATGTGTACAGCAACCTGTGTCAGTGCAGACTCCTCCTCCGGTGGATCCGGCTGCACAGGGAACCAATCAGAGTTCTCCAGCACCCGCCCTCTCTCCAGATCAAGCACGTAAACCTGGACAGAACTTCAGATGTCTGTGGCAGGCATGCAAACGGTGGTTTGACACGCCGTCACAGGTGTTTTACCACGCAGCTACATGTCATGGCAGTAAAGACGCGTACCCAGGGCAGTGCCAATGGGAGGGCTGTGAACCTTTTCCTCGCCAGAGACTATCCTTCATCACGCACCTGCAGGATAAGCACTGCTCGAGGGAAGCGCTCTTAGCCGCACTCAAACTGGAGGAGCAAACGCAAGGCAGCAACCCCAACACTTCCAAGTCTCCTCCAGCTGCGGTCAGCAGTCCTCCACCTCCTCCCAGACCACAGAAAGCGCTCGTCAACCACCCCAGTGCAGCTCTCATGGCTTTACGTAGGGGCTCGCGAAACCTGGTGTTCAGGGACTTCACAGACGATAAAGAGGGACCAATGACCAAACACATTAGACTAACTGCTGCCTTAACGTTAAAGAGCATCGCCAAGTACTCGGATTGTGGACGGAAgttGGTAAGGCGGCATGAAAATCATCTCTCTGTGCTGGCGCTGAGCACTATGGAGGTCTCCACCACGCTCGCGAAATGCCTTTACGAACTCACGCGCTCTCTGCAGGCCTGAGCTCAGCTCAACCCAAAAAAAACCTTCGGAAGGAGACGAGAAGCCCATTTCCCCATTCTGCTGCCACACAGGTCGCCAGCGTCGTTGGGTCGTCTCCCTAAAACCCCTAAACAcccttatctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctgtccctctctccaTTCCACCCAGTCCCTCTCCACCACCTCCCTTACAAACTGCCACGGGTCTTCCACCAGCCACTCAGAAACCAGCGCCCATTTCACTCTTCTAACCGCCTCTTCACGCCTGGCCCGACGAGCACATTTTTATAGTCCCAGAGGAGCGCAGGGGGATTTTGTGGGCGGGGCAAGTGGACAACGGTGCGGGGCGGCAGAGGTGTGGctagattttgttttttctttataactTGATAGCTTGGTTTTCTTACTTGAGCCGATTatattttcacttatttattattgaaataaataccaatatgagtaaatgagaaaaaaaaaaattgtgtaaatatttgtgaaTAGATATAAAGTTAAATCACCCTCCTTCATGCCGCTGCTGCCCACTGGTATCAGAAGCATTACGTCAGTAGGTTCAGACTcgcgtttttttgtttttttttatttcaacccCTGGTTACTCGTTTTGAGATGTGATTCTATACTCAGCAGTGGATGAATGTACTTAAACCCTGTAAATATTCTGCGAAGGTACTGATGCTGTAAAGTTTTGGGAGGGCTGGCGGAGGGCTACAGGTTTTTCTTTGTGGaactgtgattttgtttttttgtttttctcccctTTTTTGTACTATTATAACTTGTAGAACTCATTTTGCTGGCTGAAAGAGtatgaaataatatatcataTGTCATTTTGTAGAAGAGACGAAAAACATATTGAAGGTATTCCCCTCAACCTGTATTCACTGTAAGCGTCAGAGTACGAGCCCGACCGCCCGTACGTGattctttttgtatttgtaaattgGTTTAAATACATGGAGTTTTATACAGGTTTTCTCCTGTGTTCTTTGCTTTCCGTGCAGGTATGATATTTTCCTCCAGACCTTTTTTCTATCTTAATATAGTGTGGGATTTTATTGTactattttgcttttttttttttcttttttttttttttttttgttttgttttctttttgtttttcatccatTCTTACGACCACGCCACATTCCGGCTCCCGGACCCCAGGCTGTCCTCTCTGCTGTGTGTTGTGTAACATTTATTACTGCCTGTTGTGTTAGCATCCCAGCGGGGTCACGACCCCTTCCCCCCCAACCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265369 lncRNA downstream 4073 1175879 ~ 1176615 (-) True G178876
TU265361 lncRNA downstream 17842 1162287 ~ 1162846 (-) True G178868
TU265342 lncRNA downstream 41583 1129199 ~ 1139105 (-) False G178856
TU265335 lncRNA downstream 41583 1135490 ~ 1139105 (-) True G178856
TU265352 lncRNA downstream 51990 1127788 ~ 1128698 (-) True G178862
TU265379 lncRNA upstream 53762 1237393 ~ 1237952 (-) True G178884
XM_043230740.1 mRNA downstream 75315 1089815 ~ 1105373 (-) True tulp3
XM_043230741.1 mRNA downstream 75317 1089815 ~ 1105371 (-) False tulp3
XM_043230760.1 mRNA downstream 110245 1043383 ~ 1070443 (-) True ptn
XM_043230800.1 mRNA downstream 256428 914782 ~ 924260 (-) True mtpn
XM_043230799.1 mRNA downstream 256429 911904 ~ 924259 (-) False mtpn
XM_043230784.1 mRNA upstream 20085 1203716 ~ 1220286 (-) True gas2l3
XM_043230782.1 mRNA upstream 20085 1203716 ~ 1220285 (-) False gas2l3
XM_043230781.1 mRNA upstream 20085 1203716 ~ 1216077 (-) False gas2l3
XM_043230785.1 mRNA upstream 20085 1203716 ~ 1215741 (-) False gas2l3
XM_043230783.1 mRNA upstream 20085 1203716 ~ 1215741 (-) False gas2l3
TU265340 other downstream 41583 1135490 ~ 1139105 (-) False G178856
TU265345 other downstream 41583 1135490 ~ 1139105 (-) False G178856
XR_006248601.1 other downstream 256429 911904 ~ 924259 (-) False mtpn
TU265306 other downstream 289909 883253 ~ 890779 (-) False LOC122333240
XR_006248608.1 other downstream 425930 754625 ~ 754758 (-) True LOC122333264

Expression Profile