RNA id: XM_043230759.1


Basic Information

Item Value
RNA id XM_043230759.1
length 5323
RNA type mRNA
GC content 0.57
exon number 22
gene id arid2
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 1180688 ~ 1200891 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTCTTTTTGTCTGAACTGGATCCCTCTGCCGCTTCACAGTGTGCGCGATTAAACCGGAGCCGCGTCCGTCCCGCACTGTCAAAAAACCCACTCCAAACCCCAACACAGGCGCAGCCGGTACCGTTGTTTTCCCGTGCAGCCATGAGCGGTGCCGCGGTGCCGTTGGACTGAGCTCGCTCGGGTTCGCGGGCTGCTCGGGCTGCCGTTGGAGCGGGTTTCTCCACTCTCATCCTCCGTCGTTTCTTTAACTTTTCAAACACGCAGCCGCGCCGGAGCGGAGCGGACCGGAGCATGGGATCCCCGGACTCTTAGGAACCAAATCTGAGCCGGGGGTTTGACCGAATTTCAGCGAAACGATGGCGAACTCGACGGGGAAAAACCTCCCCGAGCAGCGGAGGAAAGGACAGGCTTTCCTGGACGAGCTGCGGCAATTTCACCACAGCAGAGGATCTCCGTTTAAAAAGGTTCCCGTGGTGGGTGGGAAGGAGCTGGATCTGGGCGCTCTGTATATGAGAGTGGTGTCTTTAGGGGGCTTCGCGAAGGTGTCCGACAAGAACCTGTGGGCCGAACTGAGCGAGGATTTCAATTTCCCCAGGAGTTGCTCGAatgctgcttttgttttgaaacagtACTACCTTCGCTATCTAGAGAAGTATGAAAAGGTGCATCACTTTGgagaggaagatgaagaggagcAGCCGGGGAATCCTAAACCTTCGCTTCCGATTGGTGCAATACCCACGTCATACAACTACCAGCAACACACTGTATCAGACTATCTCCGGCAAAGCTATGGGCTGTCGACGGATTTCATCCCTCCATCCGATTATAACAAACTGGTGCTGTCTCTCCTGTCTGGGCTCCCGAACGAGGTGGACTTTGCCATTAACGTGTGCACTCTCCTGTCCAACGAAAGCAAACACGCCATGCAGCTAGAAAAAGAGCCCAAACTCGTCACGCTGCTGCTGGCACACTCTGGAGTCTTCGACGACTCATTAGGCAGCTTTTCTGCTCTTTTTGGGACAGACTGGCAGGAGAAAACATCACGAGACTTTGTGAGGttttggaaAGATGTCATAGAAGACAATGAAGTCAAAGATCTCATCTCAGACAAGAGCTGCTCACCCCAAAACGGATTGGAGACGAGGGAAGTCTGCACTCCTCTCTTCCACCCGGCACGTGCCGTAGGCATCGGAGACGTCGAGGGCCAGCGGGTGTTGCAGGTGGCAATGATTCTGAGGAACTTGTCCTTTGAGGAGACCAACATCAAACTCCTGGCAGCTAATCGCACATGTCTGCGCTTCCTCTTGCTGTGTGCGCACTGCACCTTCGTCCAGCTGCGGCAGCTGGGTCTCGACACACTCGGCAACGTCGCCGGAGAGcTTCAGTTGGATCCAGTTGATTTCCGAACAACGCATCTGATGTTTCACACCATCACGAAGTGTTTGTTGTCACGGGATCGGTTTCTCAAAATGAGGGCCATGGAAATTCTCGGGAACCTGAGCAAAGTGGAGGATAATGGCGTTCTGATCTGTGAGTATGTGGATCAGGAGTCATACCGAGAAGTCATCGCCCTCCTGACGCTGCCGGACATCATGCTGGTCATCTCCGCGCTGGAGGTCCTGTACCAGCTGGCCGAGCTCGGAGAGATCACATGCTCTAAAATCTCCTCCGTGGAGAGAAGCATAGatCTTCTAGTGCGGTTGGTGTCGGTGGACCTGCACACGTTTGGACCGGATGCCCTGACGGCAGTAAAACTCATCGAGCATCAGGCCTCGAGTAGTCAGGTCTCAGAGGTTCGGCCGCAGCTCGTTGAGCACGTTCCCCCACCTACACAAGGCACTCCTGGTGCTGTAAACAGGGCACCAGTGCAGTCTACGCCTCCGCCTGGGATTGTGGAAGTAGACGGAGAGAAATTCACAACTCAGTGGCTAAATGCTCATTTTGAGGTTCATCCAGATGGTTCCGTCTCTCGCTCTGAGATGTACTCTGAATATCTGGCAACATGCAGCAAGATGGCGCGGGGTGGCGTATTAACATCCAATAACTTCTACAAATGCCTGAGgACGCTGTTTCCTAATCACACAGTGAAGCGTGTGGAGGACACACGGCTGAGTGGACAGGCTCAAATCCATGTGGTTGGTGTGCGGAAGAGGCCAATTCCTCTTCCCGTCCAGCTTTattttcagcagcagcagcaggccaGTCCTGCACCAGTTCCCAAACATGAAGCTCCCTCAGAAACCCCTCAGTCCCAGTCAGTGCTGCCTCTCGGAGTGGGAGGGCAGCTTGTCCGGGCACCAGCACCAAGCCTTACTGCCGGCCAGGCAGCACCACAGGTGGCCTTCACCATGCATGGGACGTCGCACGCCAACGCTCCCAGTGCTCCTGCGCCAGCCCAGACTGTTCCTCGACTCCCCATGAACCCGCCAGGACAAGCTGCACTTCCTCCTCCATGCCCTCCTGCCACCGCCCCAGTTCCCATACGACCCAATGACATCCTCAAAACGGCCATGATTCAGAGCTCCATCCCCACGGCCACTGCTACACCTGCTGTTCCCAACCACAGCGGCTCGCCTACccagcagcccttgctccatcACGCTCCCGTTACACTGATCCAGCAGGGGCCACCACCCCAGGGACACGTTTTTGCAGGTCGAGTGCAAGGTGTATGTCCTTCAGTGGCCCAGCAACGCCTGCAAGCCCCTCAGGGACAGCAAGTTGCCCCTTCCCAAGAGGCTGTGGTGCTCGCGCCACCTCAGTATGTCAGTGCTCCGTGCACTTCGCTAATGGCAGGTGGGCAGGTTGTGACTGTCTCAGGCGTGCCTAGCAACCGCGTCGCGTTTCAAAATATTGCCCCCAAACCTTCACCGCAAGCGCAGTCACCACAGCCTCAATCTCAACAGCCACAACAGCAAAGCTTAGTCATCGTCAGTCAGAATCAACAACCCAACTCCGCATTCGCCCCAGCCATCCATCAAATCGTATTGACCAACCCCAGCTCTCAAACCATCCAGCCACAGCCCACACAGTCTCCCGCTTCCCCCAGTGCGCCGATCCCTAACACCACTCCCTTGCAGCAAACCCCACCCAACACAGTCAGCCACATGCTGTCCGTCAAGCGGCAGTTTCAGCAGACTCCGCCCCCTCCACCCCCAGCCCAACCTACCTCCACAGAATCCAGTCTGATCAAACAGTTACTGCTTCCGAAACGTGGTCCTTCCACCCCAGGCGGAAAACTCATACTCCCCGCTCCGCAAGTTCCCGCTCCTGCGAGCACGAGGGCACCAAGCCCGCAAGTCGTATACCAGGTGACCAACAGTGGTCCGATGCCGTCTCAACCGCAGTTGAACGTGCAACTTATGCAGAGCCCTTCCGGTGCCGTTCCCATCTCCATCCTCCCAGGGCAGATCATCTCCACCTCCACCCCTGGCACCCTCCTGCAGGCTACGCCCAGCAACCAAGTTACCTTCACAGTAGTGCCAAACTCCGGCTTCCCCGGCCAGGGAGCGCAAACCCCTCCCACGATCGGCCTGCAGTTGACTCCGCCTCTGCCAATTGCGGGAGCCGCGCCCATTCCGCCTTTCCGAGGTGACAAAATCATCTGCCAAAAGGAGGAGGAGGCCAAGGACGCCACAGGGCTGCACATTCATGAGCGCAAGATCGAGGTCATGGAGAACAACTCCGTCGCCGACGGTTCGGCCAAAGCCAGCAATGGTGACTCCGCAGAAGTGGACGGACCTGCGGCAAAGCTGCTCAACGGGAGGAAGTTTGACTCAAGTCTACCTCCATACCACTCAGGGAACAGCCAAGCAGAGGCACTAAATGGCCCTGCAGCGCAAGGTGGCGACAGCAGTGGCGGCGGCCCTGGGAAGCAGACGCCCTCTGACCCTAAAAAGCTAATGGTGAACGGGGTGTGCGACTTTGACCGATCAGACGCCACCCACCCGAGCAAAAACATTCCAAATCACAAGGCTTCCAAACACATGGGGAACGGTGAGGTGCTGTCACCTCAGAAAGCGCACGGGGCTTTGGGCCTCACGGACTCTCTCGCTGCTCCTCAGCAGGACACTGCCAAAGCAGAGCAGGCCGAACGCTTGGCCAACGGGCCCAGCCACGGCACCGAGATCTCCAACGGCCCCAACTCAGAGACATTGGGCAACAGCAGGCAACAGCACCCACCTCATAACCACTCCCCACCTCCGCCCGTCTCCGAGCCCCCGCCGCCGCCTCCCGCTAACGGCACCTCGGAGAGCCGGCCCCTGAAGAGACCGCTGGAGGACGGGGACAGAGGTACCTCCGGAATCCCCACCAAAATGGGCGTACGGATAGTGACCATCAGCGACCCCAACAATGCTGGTAACAGCGCCACCATGGTGGCCGTGCCGGCGGGCGCAGACCCAAGCACAGTAGCAAAAGTAGCAATAGAGAATGCAGCGCAGCAGAGACCAAGTGTGCCTTCAGGATTACTAGAAACTTTCAAGCAGCAACCTGTGTCAGTGCAGACTCCTCCTCCGGTGGATCCGGCTGCACAGGGAACCAATCAGAGTTCTCCAGCACCCGCCCTCTCTCCAGATCAAGCACGTAAACCTGGACAGAACTTCAGATGTCTGTGGCAGGCATGCAAACGGTGGTTTGACACGCCGTCACAGGTGTTTTACCACGCAGCTACATGTCATGGCAGTAAAGACGCGTACCCAGGGCAGTGCCAATGGGAGGGCTGTGAACCTTTTCCTCGCCAGAGACTATCCTTCATCACGCACCTGCAGGATAAGCACTGCTCGAGGGAAGCGCTCTTAGCCGCACTCAAACTGGAGGAGCAAACGCAAGGCAGCAACCCCAACACTTCCAAGTCTCCTCCAGCTGCGGTCAGCAGTCCTCCACCTCCTCCCAGACCACAGAAAGCGCTCGTCAACCACCCCAGTGCAGCTCTCATGGCTTTACGTAGGGGCTCGCGAAACCTGGTGTTCAGGGACTTCACAGACGATAAAGAGGGACCAATGACCAAACACATTAGACTAACTGCTGCCTTAACGTTAAAGAGCATCGCCAAGTACTCGGATTGTGGACGGAAgttGGTAAGGCGGCATGAAAATCATCTCTCTGTGCTGGCGCTGAGCACTATGGAGGTCTCCACCACGCTCGCGAAATGCCTTTACGAACTCACGCGCTCTCTGCAGGCCTGAGCTCAGCTCAACCCAAAAAAAACCTTCGGAAGGAGACGAGAAGCCCATTTCCCCATTCTGCTGCCACACAGGTCGCCAGCGTCGTTGGGTCGTCTCCCTAAAACCCCTAAACAcccttatctctctctctct

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11765 ARID2; AT-rich interactive domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265369 lncRNA downstream 5355 1175879 ~ 1176615 (-) True G178876
TU265361 lncRNA downstream 19124 1162287 ~ 1162846 (-) True G178868
TU265342 lncRNA downstream 42865 1129199 ~ 1139105 (-) False G178856
TU265335 lncRNA downstream 42865 1135490 ~ 1139105 (-) True G178856
TU265352 lncRNA downstream 53272 1127788 ~ 1128698 (-) True G178862
TU265379 lncRNA upstream 36502 1237393 ~ 1237952 (-) True G178884
XM_043230740.1 mRNA downstream 76597 1089815 ~ 1105373 (-) True tulp3
XM_043230741.1 mRNA downstream 76599 1089815 ~ 1105371 (-) False tulp3
XM_043230760.1 mRNA downstream 111527 1043383 ~ 1070443 (-) True ptn
XM_043230800.1 mRNA downstream 257710 914782 ~ 924260 (-) True mtpn
XM_043230799.1 mRNA downstream 257711 911904 ~ 924259 (-) False mtpn
XM_043230784.1 mRNA upstream 2825 1203716 ~ 1220286 (-) True gas2l3
XM_043230782.1 mRNA upstream 2825 1203716 ~ 1220285 (-) False gas2l3
XM_043230781.1 mRNA upstream 2825 1203716 ~ 1216077 (-) False gas2l3
XM_043230785.1 mRNA upstream 2825 1203716 ~ 1215741 (-) False gas2l3
XM_043230783.1 mRNA upstream 2825 1203716 ~ 1215741 (-) False gas2l3
TU265340 other downstream 42865 1135490 ~ 1139105 (-) False G178856
TU265345 other downstream 42865 1135490 ~ 1139105 (-) False G178856
XR_006248601.1 other downstream 257711 911904 ~ 924259 (-) False mtpn
TU265306 other downstream 291191 883253 ~ 890779 (-) False LOC122333240
XR_006248608.1 other downstream 427212 754625 ~ 754758 (-) True LOC122333264

Expression Profile