RNA id: TU265332



Basic Information


Item Value
RNA id TU265332
length 1006
lncRNA type intronic
GC content 0.32
exon number 2
gene id G178853
representative True

Chromosome Information


Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 1044382 ~ 1045445 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


atatatatatatatatatatatacatacatgcgcatgcgtgtatttatatagacataatCAATAAGTGTTGATAAATGACACTTTACACTTAAAGTCAAATAATATTTCTCACTTTCGTACTGTATTTACactttgttgttattatttacctGTTGATCAATCGTCTGATACCATTTggatcaaaatacattttggaaaaCATTTGTAAACCTTTTGTGAATCTGATCtctggagaaacatctgagCGTCTAGAAGAAGGTGCTTCCTCCAGTTGTCTTGTTCTGGTGATTCTGGTCttctgcttgtgtttgtgtttgatttgaATGGGTTTAATCTTTATGCTAATGAGATGCTAATGCTATGAACGCTTGGGTGGCGTTATTGGACGCGTAATCATCATCAGTCAGTttaatgaagatttttttgtgtgttcggCGAGTCCAGACACGACTGCAGGCGGCAGGTGTTGATGACAAGCAGAACTTTTACACTTGAGAAGCTCTGATCCACAGGTGACGTCCACCAGCGCTCGCTCAGCTCAGGAGAACCTTAATTAAACCACGCCAGGGTTCATTTCATATCTCAGAGGAACCTTTATAAATATCCTCATTTGACAATAGGATCATTCAGCGTGATTATCTGGATGTCACATTGTCCTCCGAGTGAAAAAAAGTCCCGTTAAAAGAATACAGCTTTTTTTCCAACAGatgtacaatttatttaacGCTTTGGATTTTTTTTCGTACACTAATGGAATTATAGAAAATAGTTTGTAGATCCCAATagcatttaaaagtaatgttttaaaataaaaaatactgtaatataaattaatacattataattcaatgaataataaaataaattaatacaataatgtaataaataaatacattagaattagaatttttatatatatataaaatgacaatacaAGGTTAAATGTCTTTAGTtgtcattaaaatgtcacatgcacaaaaaaatactatatatatatatatatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006248607.1 lncRNA downstream 22219 974052 ~ 1022163 (-) False LOC122333259
XR_006248606.1 lncRNA downstream 40127 974051 ~ 1004255 (-) True LOC122333259
XR_006248605.1 lncRNA downstream 59701 959497 ~ 984681 (-) False LOC122333259
XR_006248604.1 lncRNA downstream 59701 974057 ~ 984681 (-) False LOC122333259
TU265254 lncRNA downstream 97859 856479 ~ 946523 (-) True G178791
TU265352 lncRNA upstream 82343 1127788 ~ 1128698 (-) True G178862
TU265342 lncRNA upstream 83754 1129199 ~ 1139105 (-) False G178856
TU265335 lncRNA upstream 90045 1135490 ~ 1139105 (-) True G178856
TU265361 lncRNA upstream 116842 1162287 ~ 1162846 (-) True G178868
TU265369 lncRNA upstream 130434 1175879 ~ 1176615 (-) True G178876
XM_043230800.1 mRNA downstream 120122 914782 ~ 924260 (-) True mtpn
XM_043230799.1 mRNA downstream 120123 911904 ~ 924259 (-) False mtpn
XM_043230787.1 mRNA downstream 153678 881458 ~ 890704 (-) True LOC122333240
XM_043230761.1 mRNA downstream 163357 860592 ~ 881025 (-) True upf2
XM_043230740.1 mRNA upstream 44370 1089815 ~ 1105373 (-) True tulp3
XM_043230741.1 mRNA upstream 44370 1089815 ~ 1105371 (-) False tulp3
XM_043230759.1 mRNA upstream 136525 1181970 ~ 1200891 (-) True arid2
XM_043230784.1 mRNA upstream 158271 1203716 ~ 1220286 (-) True gas2l3
XM_043230782.1 mRNA upstream 158271 1203716 ~ 1220285 (-) False gas2l3
XR_006248601.1 other downstream 120123 911904 ~ 924259 (-) False mtpn
TU265306 other downstream 153603 883253 ~ 890779 (-) False LOC122333240
XR_006248608.1 other downstream 289624 754625 ~ 754758 (-) True LOC122333264
XR_006248609.1 other downstream 290496 753751 ~ 753886 (-) True LOC122333265
TU265206 other downstream 524016 515717 ~ 520366 (-) True G178757
TU265340 other upstream 90045 1135490 ~ 1139105 (-) False G178856
TU265345 other upstream 90045 1135490 ~ 1139105 (-) False G178856

Expression Profile