RNA id: TU265340


Basic Information

Item Value
RNA id TU265340
length 2356
RNA type TUCP
GC content 0.41
exon number 3
gene id G178856
representative False

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 1129199 ~ 1139105 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATGTCGtttcacatttctttatttttcatgttacaTAACATGGAAACAGCTTCGGTGATACAAAAGTCTCGGATACGTGGCTCGTGATTGGTCAAGGCACAGGAGGCCGCAGCCGATTGGCCGTGGTGTTTATGATACGACGGCAGACAAGCTTTCGCCTCATTTCTCACGACTGCTCCTCTACGGTCAGAAAAATACTGCGATTCGGTGTTCATTTCACATTAGCAAAATACATGTAAACTGTTACAGTTCGTACATTCAGATGTTAGGATTGCTGCACATTTTCCCTGAAGAAAGCGACGAGCGTGTAAACACGCTTAAAGTCGACATGAAAACACTCTCACAGCCCCTTTTTACTTCCACAGTCATGACCAGAAATGAggaaaaagtgaataaaaaaatccagtAACAGGAAATATACTtaataatttcaacatttactaatacattatcAATGTTAATACATTCATGAACTAAgagtcacatttttaataattacccAAACGGcaaaaaacgtgtgtgtgtgtgtgtgtgtgtgtatttcacaatattcaaaaAAGGTCAAAACACGTATTTgctggattttattttaagatatatatatattcacgtCAATAGGTTTTCGAGCGACATATTCTTAGCAATCGTTTTacaattgttaaaatatatttaaaaataaaaaattttagtttttgttcaacAATCATTTTGAACTATActgttaattatattaaaaaataatttggccatataaaaaaaattacagtacgagtaatgcaaaaaataaaataatttttatttttttagttgatACGTAAAATGTGTTGCTGTGAGGTTTTACTAAAAGAAAGCAAACGGGGTCTGTTTTTGATTTCACATCGACTTTAAAACGAATAGAAATCGCACTTACGAACGAGAGGTGCACGGCGGAAGACAAACACTGCTCAAAATCAGATGGGTTTCCAGGCTCTCGGCACCGTTTCAGCTGCTAACTAATCAAGTAACAcgctaaaagaaagaaagaaagaaagaaaaaaaaccccacgcAACTCCTTTCTTCAGATCGTTGTAAAAACCGTCAAGGAGGCACAATAGAAATACAATGGCGTTTctacaaatttacaaaaagaaaacacgATGGCACtgacaactaaaatataatactaaaactCTAGCATGTGTCCGTCCACAACAAATTAGACTATTTACAAACCATATACAACGTCCAAAAAGACCatgtttctgatttaaaaacatgcaaaaatatcataaccatttcatttgaaatattcaCTTGCTTTGTGAGTAAATAGATCACCAAAGGATCTTTAAATATCGTCCACTTTGGCTGGACCGGCGTGACTGTAAACCTCCAGCGGGATCTGGGCAGTAAACCAGCGCTCGGGACGAAACGCCGATTAAAAACGTCTTGCGATGAACCGATCCTCTTGACGAGTCGATGCTCGCGGATCGGCTTGAGAGGAAAAAGCTGAGCTTTAGTGGACCAACTGTACTTCGTTTTGgtacaaaaaatgcaataattggACCTTTTTGCCCCTCTCAAAGAGGAAATCTGATTCAAGTGATAGCATCAAACACAGAGTTGACTCAGAAATCAGCATCGTTTGGTTGCTTTCATCCTTAACATGCGTGAGAAGAAAAGCACTGAAATGCCATCTTTGAGTGAACCGATAACAAGAAActaactatctatctatgacCAGCTAATGAAGAAGGCAAACAGGAAGAAACGTGATTGTTGGCATGTCTTGATAAAAAAATGCTCAAGTGCTTATTTGATGAACCCTTCTgcccgcctctctctctctctctctctctctctctctgatctgTTAAAACAGCTGAGCAGAGTTtatgagaggagagagaggcgGAGGCGCAGGGTTCGTCCGCGTCCAGAGATGATCTCTGGGATGAAACGGCTTCAGCGGGTGAACGCCGGCGCTTTAGTGAGCACCTTTCGAGCCCGGCGGGTTGTGAATCCAGTCCAAGACGATCAGAGACAGGCTGCCAATCATGAAGAAGATGCCCACCACCAGGAAAATGTTACAGATATTTTCTGAGGCGATCTGAAAGGTAAATTCTTGACGAGCCGCAGGTAAAACGCCGCCGggaggatgaagatgagcaTGGTAGCTGCAGACGAAGATGAAGCCGAAGATGTCTCTGATGGTGGGGACGAAGATCACCAGGAGGTTGTTGAAGGCCAGGATAGCAGCGGCGATGAGGAAGTGTCGGATCCAGCTGAACTCTTTCCCGGCGAAACACAGCGTGATGACGGAAGAGCggatctgaacacacacatcaCCAAACCATTCAGActatatagaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265352 lncRNA downstream 6792 1127788 ~ 1128698 (-) True G178862
TU265332 lncRNA downstream 90045 1044382 ~ 1045445 (-) True G178853
XR_006248607.1 lncRNA downstream 113327 974052 ~ 1022163 (-) False LOC122333259
XR_006248606.1 lncRNA downstream 131235 974051 ~ 1004255 (-) True LOC122333259
XR_006248605.1 lncRNA downstream 150809 959497 ~ 984681 (-) False LOC122333259
TU265361 lncRNA upstream 23182 1162287 ~ 1162846 (-) True G178868
TU265369 lncRNA upstream 36774 1175879 ~ 1176615 (-) True G178876
TU265318 lncRNA upstream 41583 1180688 ~ 1183631 (-) False arid2
TU265379 lncRNA upstream 98288 1237393 ~ 1237952 (-) True G178884
XM_043230740.1 mRNA downstream 30117 1089815 ~ 1105373 (-) True tulp3
XM_043230741.1 mRNA downstream 30119 1089815 ~ 1105371 (-) False tulp3
XM_043230760.1 mRNA downstream 65047 1043383 ~ 1070443 (-) True ptn
XM_043230800.1 mRNA downstream 211230 914782 ~ 924260 (-) True mtpn
XM_043230799.1 mRNA downstream 211231 911904 ~ 924259 (-) False mtpn
XM_043230759.1 mRNA upstream 42865 1181970 ~ 1200891 (-) True arid2
XM_043230784.1 mRNA upstream 64611 1203716 ~ 1220286 (-) True gas2l3
XM_043230782.1 mRNA upstream 64611 1203716 ~ 1220285 (-) False gas2l3
XM_043230781.1 mRNA upstream 64611 1203716 ~ 1216077 (-) False gas2l3
XM_043230785.1 mRNA upstream 64611 1203716 ~ 1215741 (-) False gas2l3
XR_006248601.1 other downstream 211231 911904 ~ 924259 (-) False mtpn
TU265306 other downstream 244711 883253 ~ 890779 (-) False LOC122333240
XR_006248608.1 other downstream 380732 754625 ~ 754758 (-) True LOC122333264
XR_006248609.1 other downstream 381604 753751 ~ 753886 (-) True LOC122333265
TU265205 other downstream 615124 509272 ~ 520366 (-) False G178757

Expression Profile